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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 31-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae 70585
- locus tag: SP70585_0998 [new locus tag: SP70585_RS04960 ]
- pan locus tag?: PNEUPAN001954000
- symbol: SP70585_0998
- pan gene symbol?: —
- synonym:
- product: membrane protein, putative
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SP70585_0998 [new locus tag: SP70585_RS04960 ]
- symbol: SP70585_0998
- product: membrane protein, putative
- replicon: chromosome
- strand: +
- coordinates: 918505..919689
- length: 1185
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP000918 (918505..919689) NCBI
- BioCyc: see SP70585_RS04960
- MicrobesOnline: 7476940 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_0846 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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1141ATGAAAGATGTTAGTCTATTTTTATTGAAAAAAGTTTTCAAAAGTCGTTTAAACTGGATT
ATCTTACTTTTATTTGCATCTGTACTCGGTGTTACCTTTTATTTAAATAGTCAGACTGCA
AACTCACACAGCTTGGAGAGCAGGTTGGAAAGTCGCATTGCAGCCAACGAGAGGGCTATC
AATGAAAATGAAGAGAAACTCTCCCAAATGTCTGATACCAGCTCGGAGGAATACCAGTTT
GCTAAAAATAATTTAGACGTGCAAAAAAATCTTTTGACGCGAAAGACAGAAATTCTAACT
TTACTAAAAGAAGGGCGCTGGAAAGAAGCCTACTATCTGCAGTGGCAAGATGAAGAGAAG
AATTATGAATTTGTATCAAATGACCCGACTGCTATCTCTGGCTTAAAAATGGGGGTTGAC
CGCGAACGGAAGATTTACCAAGCCCTGTATCCCTTGAACATAAAAGCACATACTTTGGAG
TTTCCGACCCACGGGATTGATCAGATTGTCTGGATTTTAGAGGTTATCATCCCAAGCTTG
TTTGTGGTTGCGATTATTTTTATGCTAACACAACTATTTGCAGAAAGATATCAAAATCAT
CTGGACACAGCTCACTTATATCCTGTTTCAAAAGTGACATTTGCAATATCCTCTCTTGGA
GTTGGAGTGGGATATGTAACTGTGCTGTTTATCGGAATCTGTGGCTTTTCTTTTCTAGTG
GGAAGTCTGATAAGTGGTTTTGGACAGTTAGATTATCCCTACCCAATTTATAGCTTAGTG
AATCAAGAAGTAACTATTGGGAAAATACAAGATGTATTATTTCCTGGCTTGCTCTTAGCT
TTCTTAGCCTTTATCGTCATTGTGGAAGTTGTGTACTTGATTGCTTACTTTTTCAAGCAA
AAAATGCCTGTCCTCTTTCTTTCACTCATTGGGATTGTTGGCTTATTGTTTGGCATCCAA
ACAATTCAGCCTCTTCAAAGGATTGCACATCTGATTCCCTTTACTTACTTGCGTTCAGTG
GAGATTTTATCTGGAAGATTATCTAAGCAGATTGATAATGTCGATCTAAATTGGAGCATG
GGGATGGTCTTACTTCCTTGCCTGATTATCTTTTTGCTAGTGGGGATTCTATTTATCGAA
AACTGGGGAAGTTCACGTAAAAAGGAAGTTTTTAATAGGTCTTAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SP70585_0998 [new locus tag: SP70585_RS04960 ]
- symbol: SP70585_0998
- description: membrane protein, putative
- length: 394
- theoretical pI: 7.64158
- theoretical MW: 44961.4
- GRAVY: 0.362437
⊟Function[edit | edit source]
- TIGRFAM: rSAM-associated Gly-rich repeat protein (TIGR04260; HMM-score: 14.4)Chlam_Verruc_Plancto small basic protein (TIGR04137; HMM-score: 11.6)and 1 morecardiolipin synthase (TIGR04265; EC 2.7.8.-; HMM-score: 10.7)
- TheSEED :
- FIG01113988: hypothetical protein
- PFAM: no clan defined DUF3603; Protein of unknown function (DUF3603) (PF12227; HMM-score: 13)DUF4131; Domain of unknown function (DUF4131) (PF13567; HMM-score: 11.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 6
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.001
- Cytoplasmic Membrane Score: 0.9931
- Cell wall & surface Score: 0.0006
- Extracellular Score: 0.0053
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.357003
- TAT(Tat/SPI): 0.008209
- LIPO(Sec/SPII): 0.01954
- predicted transmembrane helices (TMHMM): 7
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKDVSLFLLKKVFKSRLNWIILLLFASVLGVTFYLNSQTANSHSLESRLESRIAANERAINENEEKLSQMSDTSSEEYQFAKNNLDVQKNLLTRKTEILTLLKEGRWKEAYYLQWQDEEKNYEFVSNDPTAISGLKMGVDRERKIYQALYPLNIKAHTLEFPTHGIDQIVWILEVIIPSLFVVAIIFMLTQLFAERYQNHLDTAHLYPVSKVTFAISSLGVGVGYVTVLFIGICGFSFLVGSLISGFGQLDYPYPIYSLVNQEVTIGKIQDVLFPGLLLAFLAFIVIVEVVYLIAYFFKQKMPVLFLSLIGIVGLLFGIQTIQPLQRIAHLIPFTYLRSVEILSGRLSKQIDNVDLNWSMGMVLLPCLIIFLLVGILFIENWGSSRKKEVFNRS
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0846 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]