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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 15-DEC-2024
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae 70585
- locus tag: SP70585_RS07855 [old locus tag: SP70585_1587 ]
- pan locus tag?: PNEUPAN002831000
- symbol: SP70585_RS07855
- pan gene symbol?: pclA
- synonym:
- product: pneumococcal collagen-like adhesin PclA
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SP70585_RS07855 [old locus tag: SP70585_1587 ]
- symbol: SP70585_RS07855
- product: pneumococcal collagen-like adhesin PclA
- replicon: chromosome
- strand: -
- coordinates: 1461152..1467109
- length: 5958
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_012468 (1461152..1467109) NCBI
- BioCyc: SP70585_RS07855 BioCyc
- MicrobesOnline: see SP70585_1587
- PneumoBrowse for strain D39V: SPV_1376 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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5941ATGAAACATTCACATAAAAAATCATTTGACTGGTATAGCATGCAACAACGTTATTCTATT
CGTAAGTATTACTTTGGTGCAGTTAGTGTCTTGCTCGGTACCGCTTTGGTATTAGGTGCA
GCAGCTAGTGTCCAAACAGTACAAGCGGAAGAAAACAAACAAGAAACTACCAATAGTATT
TCTGTTGGTAGGGGAGAAGCAGCTACTAAACCAGCAGAGGTTTCTGCGTCTAATAAAGAG
AAAACCTATGCAGCTCCAACTGTAGCTAATCCAGTAGAAACGACTCCAGTTAAAACTGGA
GAAGTTACTAAACCAGCAGAAAAAGTTGAAGAAGCAAAAAACAAAAAAGAGGAAGTAACG
CATCAAGATGCTATTGACAAGTCAAAATTGTTAACGGCTCTTTCGCGTGCTAAAAAGTTA
GAAAGCAAGTTATATACAGAAGCAAGTGCTGCTAACTTGCAAACAAGTATCCAAGCTGGT
CAAAGCTTGCTTGGGAAAGCAGATGCATCTGAAGCTGAATTATCAGCAGCAGAGTCATCT
ATTCAATCATCTATTATTGGTCTAGAACTTCGTTCTAACTCTAACAAAGGAACTGTATCA
GAAACTCCTGTAGCGAAGAAAGCTAATATAGTTGAAGCGAAGGAAGAGACTAATCCAGCT
GCAACAACTGATCGTTCAGCTGTTGATAGTGCTGTTTTGCCAACTAGCACAGCTGCCAAA
GTAGAAACAACTTCAGCTCCAGCATCTATTAATGAAATCTTGAAACCAGGTTTGAGCCTT
TCTGATGCTCGCCAAAATCCAGCTATCCGTAAGGAAGATGTTGATAGAGGGTATAGTGGT
TTTAGAGCGGCGCCTGCTCCAACGAACCAACCAGTAACTAATCTAGGAAATAATACTGTT
TTCACTGATATTAGCAGAGGTTCTCATACTTTCCGTGGTAATGGAAATTCACGTCGTGGA
AACCCGATTCATTTTGATGTAACAACAACTAGAGTTAGAAATAGAGTAGATTTCTCAATC
AGATATTCAGGACCAGGTGAGTTTGTTAATAACAACTTTATCTTAGACAAAGGAAATGGA
TTCGGAGAACCTTCTCGTGCAACTGTTTCAACACCAAAATTAAGAGACCAAGTTAAAAAC
ATTAGTAAGGGTGGAAACTTTGTTTCTCATTCAGGCTACAGTTTAGAAGCTGCAGTAGAA
ACAAGCACCAATCAAACAATTAAGTTTAGTTTACCTATAGCCAACCCTAATGGTGATCTG
TCTGTTCGATTAAGACCTGTTACTTTTAATGTAGGTCAAGGGGAATCAGGATCTGCAACT
AGTAATGATCCATATAGTAACTCTAACTATTACTTCAGAGAAAAACCACTCCTCTTGGAT
GCAAATCCAAATGGTGGTACTAATAATAAGACTGTTTCAGAAGACATTGACTTCCAAACT
GTCTATCTTCCAACTAGTAAGTTACCAGAAGGTCAAACTAGATTAGTTCGAGAAGGTGAA
AAAGGACAACGTCAAATTACCTATAAAGTTCATCGATTTGGTAACGAAACAGTCTTAGGA
TTGCCAATTAGTAATAGAGTTACTAAAGAAGCTAAGCCACGTATTATGCAAATTGGTGTG
GCTAAAGAGCTAATCGATACAGTAAAACCACGTGTTGATCAAAATAAAGTTGGTGATACA
AATAACCTCACTTTCTATCTTGATAACGATGGCAACGGTGTTTATACTGAAGGTGTAGAC
GAACTTGTTCAAAAAATTGCTATTAAAGATGGAGCTAAAGGTGAAAAAGGAGACCAAGGT
GAACGCGGTCTAACTGGAGCTCAAGGAGCTAAAGGTGAAAAAGGAGCCCGAGGCGAACGC
GGTCTAACTGGAGCTCAAGGAGCTAAAGGTGAAAAAGGAGACCGAGGTGAACGCGGTCTA
ACTGGAGCTCAAGGAGCTAAAGGTGAAAAAGGAGACCGAGGTGAACGCGGTCTAACCGGA
GCTCAAGGAGCTAAAGGTGAAAAAGGGGACCAAGGTGAACGCGGTCTAACCGGAGCACAA
GGTGCTAAAGGTGAAAAAGGAGCCCAAGGTGAACGCGGCCTAACTGGAGCTCAAGGAGCT
AAAGGTGAAAAAGGAGCCCGAGGCGAACGCGGTCTGACTGGAGCCCAAGGTGCTAAAGGT
GAAAAAGGAGCCCAAGGTGAACGCGGTCTAACCGGAGCCCAAGGTGCTAAAGGTGAAAAA
GGGGACCAAGGTGAACGCGGTCTCACTGGAGCCCAAGGTGAAAAAGGAGCCCGAGGCGAA
CGTGGTTTAACTGGAGCTAAAGGTGAAAAAGGAGCCCAAGGTCAGGCAGGTCGTGACGGT
GTAACTCCAACCGTAACCGTTAAAGATAATAAAAATGACGGCACTCATACTATCACTATT
AACGACGGTAGAGGTAATGTTACAAGTACTGTTGTAAGAGATGGTTTCGATGGCGCAAGT
CCATTAGTTGCGACTCAACGAAATGACGCAGATAAGACAACAACTGTTATCTTCTATTAC
GATAAAAATGGAAACAATGAATTAGATGCTTCTGATAAGAAATTAAAAGAAGTTGTAATT
GCAGATGGTGCCAAAGGTGACAAAGGTGAACAAGGTCTTCAAGGTCGTGATGGAGCTCAA
GGACCAAAAGGCGCAGATGGACAAAGAGGACCAGCGGGACCACAAGGACCAAAAGGAGAA
CAAGGTAATCCAGGAACTCCAGGTAAAGATGGAAAATCTCTAATTGCTGTTAAAAATGGA
ACTGAAACAAAAGTCTATGTAGAGGATCCGGCTAGACCAGGACAACCACTTAATCCAAAC
CAACCATTAGCAACTATCACTGATGGAAGAAACGGTACTAATGGACAATCACCAACAATT
ACAGCGACACGAAGTGTGCAAAATGGCAAAAATGGTGTATTAGTAACAATTACACCAGTA
GGAGGTCGTCCACAAACAACATTTGTAGAGGATGGACAAAAGGGTGCTGATGGGAAAACC
CCAACAGTAACAATAACTGAGGGGCAAAACGGCACACATACATTAACGGTTCATAATCCA
GGAAGTCCAGATGTGACAACTACGATCCGTGATGGAGCTACAGGACAAGCAGGTCGTGAT
GGTAAAGATGTATTAAACGGAAAAGTAAATCCACAACCAAACCAAGGTAAAAATGGAGAT
AAATATATTAATACCGAAACCGGTGATGTCTATGTTAAAAACAATGGAAACTGGGATAAA
GAAGGCAACATCAAAGGCCCTAAAGGTGACAAAGGTGCAGATGGTGCTAAAGGCGAAAAA
GGAGACCAAGGCGAACGCGGCCTAACTGGAGCGCAAGGAGCTAAAGGTGCGGATGGCGCA
GTAGGTCGTGATGGACGTGACGGTAAAGACGTGTTGAACGGCAAAGCTAACCCAGAAGCA
CATCAAGGTAAAGACGGCGATAAATACGTTAATACAGAAACAGGCGACGTCTTCGTTAAG
AATAACGGCAACTGGGATAAAGAGGGCAACATCAAAGGCCCTAAGGGTGACAAAGGTGAA
CGCGGAGAAGATGGTAAGACTCCAGAAGTAACTGTAACTCCAGGTAAAGATGGCCATAGT
ACTGACATTACATTCACTGTTCCAGGTAAAGATCCAGTTACAGTAAATGTTAAGGACGGA
GAAAATGGTCTGAACGGTAAAACTCCAAAAGTTGATTTACTTCGTGTCCAAGGAAAAAAC
GGAAATCCATCTCATACAATTGTGACATTCTATACAGATGAAAACAATGACGGCAAATAT
ACACCAGGAACTGATGAACTTCTAGGTTCAGAAATGATTAAAGATGGTGCTAAAGGCGCG
GACGGACGAGATGGTAAATCATTGCTTACTGTCAAGGATGGTAAAGAAACTAAAGTTTAC
CAAGAAGATCCAGCTAACCCAGGACAACCATTAAATCCAGAAAAACCACTTGCGGTAATT
AGAGATGGAGTAGATGGAAAATCACCTACAGTTACAGCTGTTCGTAAAGATGAAGCAGGG
CATAAAGGTGTAGAAATCACTGTTGATAACCATGATGGTTCACAACCAACTACAGTCTTT
GTTCAAGATGGTGCTAAGGGAGAAACTGGTGCAATCGGTCAGGATGGACAAACTCCTACA
ATCACTACTCAACGTGGACAAGATGGCCAAAGCACTGTTGTAACTATCACAACACCAGGT
AAAGATCCAGTAACCTTCACTGTAAAAGATGGTAAGAATGGTAAAGATGGCCGTGCACCG
AAAATCAAAGTAGAAGATATTACTTCACCTTCAAGAATTAGACGCGCTACAGATGCTGCT
GCAACTCCAACGCGTAACGGTATCCGTGTTACAGTTTATGATGATGTTAATGACAATGGG
GTATACGACGGAGGTGTCGATAAAGTATTAAATAGTAAAGATATTTATAACGGTATAGAT
GGACGTGATGGTTCAGCTCCAACTATTACTACAAAAGATAATGGAGATGGAACACACACT
ATCACAGTTCAAAATCCTGATGGTTCTGAATCAACAACTGTTGTTAAAGATGGTAAAGAC
GGTAAAACTGCGAATATCACTACAACAGAAAACCCAGATGGAAGCCACACAATTACGGTG
ACAAATCCAGATGGTTCAACTAAAGAAACTGTTGTTAAAAACGGTAAAGACGGTAAGACT
CCTAAAGTTGAAGTAACGGATAACAACGATGGAACTCACACAGTTAAAGTGACGGATGGA
GACGGTAATGTAACGAACGCTATCATCAAAGATGGTAAAGCTGCAACAGCAACAACTACT
GAAAATCCAGATGGAAGCCACACAGTAACAATCACTAACCCAGACGGAACTAAGAATGAG
TTTGTTGTTAAGAATGGACGTGACGGTGTTGACGGACGTACTCCAACCGCATCTGTTCGT
GATAATGGAGACGGAAGTCATACAATCGTTATTACAAATCCAGAAGGTGTGACAACTGAA
ACCACAGTTCGTGACGGTAAATCACCAACTGCTAAGGTTGTGGATAACGGAGATGGAACA
CACACTATCACAGTTGTGAACTCAGACGGAACAACTACAACAACTACAGTTCGTGATGGT
AGAGAACCAAAACTTGAAGTTATTGATAACAACGATGGTTCACACACTATTAAAGTGACA
GGTGCTGATGGTAAAGAAACGACAACTACAATCTTTGATGGTAAATCACCAAAAGCGAAC
ATCGTTGATAACGGAGATGGAACTCATACATTAACAATCGTAGATTCTGATGGTCGTGAA
TACAAATCTATTATTAAAGATGGTAAAGACGGCAAAGATGGCGTTTCACCAACTGTAACT
GTTGAAAATAATAACGATGGAACTCACGTTGTTACAATCACTAATCCAGATGGAAGTAAG
ACAGAAATGGTGATTAAAGACGGTAAAGATGGTAAATCACCAAAAGTTTCTGTTGAAGAT
AATGGTGATGGTAGTCATACAATCACAATCATCAATTCTGATGGAACTGTGACAAAAACA
GTTATTAAAGATGGCAAAGATGGTAGAGATGGACGTGATGGTAGAGACGGCAAAGATGGA
AAATGTGGATGCCAAGACAAACCAGTAACACCATCAAATGACAAACCAGTTCCTCCAACA
CCAAATGTGCCGACACCAGAAGTACCGGTTAAACCTGTGCCAGCGCAACCAACACCAAAT
GTACCGACACCAGAAGTGCCAGTACAACCAACTCCAGCTGTTCCAACACCAGAAGTACCG
GTTCCAGAACAACCAGTAGTACCAACACCGGCTCAACCAGCAACTCCAGTAAATGCTAAT
CCAGTAGCACCAACTACAGGTAAAGAAAACCGTGGGGACAAATTACCTGAAACTGGAAGC
CAATCTGATTATATCTCTGTTCTTTTAGGTAGCGGTATTCTATTGAGCCTATATGTAGGA
CGAAGAAAAGAAGATTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SP70585_RS07855 [old locus tag: SP70585_1587 ]
- symbol: SP70585_RS07855
- description: pneumococcal collagen-like adhesin PclA
- length: 1985
- theoretical pI: 6.51834
- theoretical MW: 207271
- GRAVY: -0.864987
⊟Function[edit | edit source]
- TIGRFAM: Streptococcal surface-anchored protein repeat, S. criceti family (TIGR04203; HMM-score: 491)and 3 moregram-positive signal peptide, YSIRK family (TIGR01168; HMM-score: 35.8)Cell envelope Other LPXTG cell wall anchor domain (TIGR01167; HMM-score: 17)Por secretion system C-terminal sorting domain (TIGR04183; HMM-score: 8.8)
- TheSEED: see SP70585_1587
- PFAM: no clan defined CFSR; Collagen-flanked surface repeat (PF19079; HMM-score: 455.8)and 6 moreCollagen; Collagen triple helix repeat (20 copies) (PF01391; HMM-score: 151.3)G5 (CL0593) G5; G5 domain (PF07501; HMM-score: 46.7)no clan defined YSIRK_signal; YSIRK type signal peptide (PF04650; HMM-score: 33.2)E-set (CL0159) BiPBP_C; Penicillin-Binding Protein C-terminus Family (PF06832; HMM-score: 29.4)no clan defined Gram_pos_anchor; LPXTG cell wall anchor motif (PF00746; HMM-score: 14.5)PGDYG; PGDYG protein (PF14083; HMM-score: 10.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cellwall
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 9.99
- Extracellular Score: 0.01
- Internal Helix: 1
- DeepLocPro: Cell wall & surface
- Cytoplasmic Score: 0.0004
- Cytoplasmic Membrane Score: 0.001
- Cell wall & surface Score: 0.9881
- Extracellular Score: 0.0106
- SignalP: Signal peptide SP(Sec/SPI) length 49 aa
- SP(Sec/SPI): 0.947738
- TAT(Tat/SPI): 0.02451
- LIPO(Sec/SPII): 0.005982
- Cleavage Site: CS pos: 49-50. VQA-EE. Pr: 0.9032
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000682811 NCBI
- UniProt: see SP70585_1587
⊟Protein sequence[edit | edit source]
- MKHSHKKSFDWYSMQQRYSIRKYYFGAVSVLLGTALVLGAAASVQTVQAEENKQETTNSISVGRGEAATKPAEVSASNKEKTYAAPTVANPVETTPVKTGEVTKPAEKVEEAKNKKEEVTHQDAIDKSKLLTALSRAKKLESKLYTEASAANLQTSIQAGQSLLGKADASEAELSAAESSIQSSIIGLELRSNSNKGTVSETPVAKKANIVEAKEETNPAATTDRSAVDSAVLPTSTAAKVETTSAPASINEILKPGLSLSDARQNPAIRKEDVDRGYSGFRAAPAPTNQPVTNLGNNTVFTDISRGSHTFRGNGNSRRGNPIHFDVTTTRVRNRVDFSIRYSGPGEFVNNNFILDKGNGFGEPSRATVSTPKLRDQVKNISKGGNFVSHSGYSLEAAVETSTNQTIKFSLPIANPNGDLSVRLRPVTFNVGQGESGSATSNDPYSNSNYYFREKPLLLDANPNGGTNNKTVSEDIDFQTVYLPTSKLPEGQTRLVREGEKGQRQITYKVHRFGNETVLGLPISNRVTKEAKPRIMQIGVAKELIDTVKPRVDQNKVGDTNNLTFYLDNDGNGVYTEGVDELVQKIAIKDGAKGEKGDQGERGLTGAQGAKGEKGARGERGLTGAQGAKGEKGDRGERGLTGAQGAKGEKGDRGERGLTGAQGAKGEKGDQGERGLTGAQGAKGEKGAQGERGLTGAQGAKGEKGARGERGLTGAQGAKGEKGAQGERGLTGAQGAKGEKGDQGERGLTGAQGEKGARGERGLTGAKGEKGAQGQAGRDGVTPTVTVKDNKNDGTHTITINDGRGNVTSTVVRDGFDGASPLVATQRNDADKTTTVIFYYDKNGNNELDASDKKLKEVVIADGAKGDKGEQGLQGRDGAQGPKGADGQRGPAGPQGPKGEQGNPGTPGKDGKSLIAVKNGTETKVYVEDPARPGQPLNPNQPLATITDGRNGTNGQSPTITATRSVQNGKNGVLVTITPVGGRPQTTFVEDGQKGADGKTPTVTITEGQNGTHTLTVHNPGSPDVTTTIRDGATGQAGRDGKDVLNGKVNPQPNQGKNGDKYINTETGDVYVKNNGNWDKEGNIKGPKGDKGADGAKGEKGDQGERGLTGAQGAKGADGAVGRDGRDGKDVLNGKANPEAHQGKDGDKYVNTETGDVFVKNNGNWDKEGNIKGPKGDKGERGEDGKTPEVTVTPGKDGHSTDITFTVPGKDPVTVNVKDGENGLNGKTPKVDLLRVQGKNGNPSHTIVTFYTDENNDGKYTPGTDELLGSEMIKDGAKGADGRDGKSLLTVKDGKETKVYQEDPANPGQPLNPEKPLAVIRDGVDGKSPTVTAVRKDEAGHKGVEITVDNHDGSQPTTVFVQDGAKGETGAIGQDGQTPTITTQRGQDGQSTVVTITTPGKDPVTFTVKDGKNGKDGRAPKIKVEDITSPSRIRRATDAAATPTRNGIRVTVYDDVNDNGVYDGGVDKVLNSKDIYNGIDGRDGSAPTITTKDNGDGTHTITVQNPDGSESTTVVKDGKDGKTANITTTENPDGSHTITVTNPDGSTKETVVKNGKDGKTPKVEVTDNNDGTHTVKVTDGDGNVTNAIIKDGKAATATTTENPDGSHTVTITNPDGTKNEFVVKNGRDGVDGRTPTASVRDNGDGSHTIVITNPEGVTTETTVRDGKSPTAKVVDNGDGTHTITVVNSDGTTTTTTVRDGREPKLEVIDNNDGSHTIKVTGADGKETTTTIFDGKSPKANIVDNGDGTHTLTIVDSDGREYKSIIKDGKDGKDGVSPTVTVENNNDGTHVVTITNPDGSKTEMVIKDGKDGKSPKVSVEDNGDGSHTITIINSDGTVTKTVIKDGKDGRDGRDGRDGKDGKCGCQDKPVTPSNDKPVPPTPNVPTPEVPVKPVPAQPTPNVPTPEVPVQPTPAVPTPEVPVPEQPVVPTPAQPATPVNANPVAPTTGKENRGDKLPETGSQSDYISVLLGSGILLSLYVGRRKED
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1376 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]