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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 07-FEB-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae AP200
  • locus tag: SPAP_RS07560 [old locus tag: SPAP_1534 ]
  • pan locus tag?: PNEUPAN002836000
  • symbol: atpF
  • pan gene symbol?: atpF
  • synonym:
  • product: F0F1 ATP synthase subunit B

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPAP_RS07560 [old locus tag: SPAP_1534 ]
  • symbol: atpF
  • product: F0F1 ATP synthase subunit B
  • replicon: chromosome
  • strand: -
  • coordinates: 1443572..1444066
  • length: 495
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_014494 (1443572..1444066) NCBI
  • BioCyc: SPAP_RS07560 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_1339 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGCACGTAACAGTAGGTGAATTAATTGGTAATTTTATTTTAATCACTGGCTCTTTTATT
    CTTTTGCTAGTCTTGATTAAAAAATTTGCATGGTCTAATATTACAGGCATTTTCGAAGAA
    AGAGCTGAAAAAATTGCTTCAGATATTGATAGAGCTGAAGAAGCCCGTCAAAAAGCAGAA
    GTATTGGCTCAAAAACGCGAAGATGAATTGGCTGGTAGCCGTAAAGAAGCTAAGACAATC
    ATTGAAAATGCAAAGGAAACAGCTGAGCAAAGTAAGGCTAATATCTTAGCAGATGCTAAA
    CTAGAAGCAGGACACTTAAAAGAAAAAGCCAATCAAGAAATTGCTCAAAATAAAGTAGAA
    GCTTTACAGAGTGTTAAGGGTGAGGTCGCAGATTTGACCATCAGCTTAGCTGGTAAAATC
    ATCTCACAAAACCTTGACAGTCATGCCCATAAAGCACTCATTGATCAGTATATCGATCAG
    CTAGGAGAAGCTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    495

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPAP_RS07560 [old locus tag: SPAP_1534 ]
  • symbol: AtpF
  • description: F0F1 ATP synthase subunit B
  • length: 164
  • theoretical pI: 5.11586
  • theoretical MW: 17986.4
  • GRAVY: -0.218902

⊟Function[edit | edit source]

  • ⊞reaction:
    EC 7.1.2.2?  ExPASy
    non-specified enzyme name
  • ⊞TIGRFAM:
    Metabolism Energy metabolism ATP-proton motive force interconversion ATP synthase F0, B subunit (TIGR01144; EC 3.6.3.14; HMM-score: 133.3)
    and 6 more
    alternate F1F0 ATPase, F0 subunit B (TIGR03321; EC 3.6.3.-; HMM-score: 57)
    Genetic information processing Transcription Degradation of RNA ribonuclease Y (TIGR03319; EC 3.1.-.-; HMM-score: 15)
    Cellular processes Cellular processes Pathogenesis protein TolA (TIGR02794; HMM-score: 10.7)
    Metabolism Transport and binding proteins Other protein TolA (TIGR02794; HMM-score: 10.7)
    flagellar assembly protein FliH (TIGR03825; HMM-score: 9.7)
    ATP synthase archaeal, H subunit (TIGR02926; EC 3.6.3.14; HMM-score: 9.5)
  • TheSEED: see SPAP_1534
  • ⊞PFAM:
    ATP_synthase (CL0255) ATP-synt_B; ATP synthase B/B' CF(0) (PF00430; HMM-score: 94)
    and 7 more
    no clan defined RNase_Y_N; RNase Y N-terminal region (PF12072; HMM-score: 17.5)
    OmpH; Outer membrane protein (OmpH-like) (PF03938; HMM-score: 16.1)
    DUF2018; Domain of unknown function (DUF2018) (PF09442; HMM-score: 15)
    ATP_synthase (CL0255) Mt_ATP-synt_B; Mitochondrial ATP synthase B chain precursor (ATP-synt_B) (PF05405; HMM-score: 10.6)
    no clan defined MAT1; CDK-activating kinase assembly factor MAT1 (PF06391; HMM-score: 10.4)
    DUF4570; Domain of unknown function (DUF4570) (PF15134; HMM-score: 9.2)
    DivIVA; DivIVA protein (PF05103; HMM-score: 7.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 1.05
    • Cytoplasmic Membrane Score: 8.78
    • Cellwall Score: 0.08
    • Extracellular Score: 0.09
    • Internal Helix: 1
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.067917
    • TAT(Tat/SPI): 0.001356
    • LIPO(Sec/SPII): 0.003767
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000558554 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MHVTVGELIGNFILITGSFILLLVLIKKFAWSNITGIFEERAEKIASDIDRAEEARQKAEVLAQKREDELAGSRKEAKTIIENAKETAEQSKANILADAKLEAGHLKEKANQEIAQNKVEALQSVKGEVADLTISLAGKIISQNLDSHAHKALIDQYIDQLGEA

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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