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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 25-OCT-2019
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae ATCC 49619
- locus tag: SPAT_2109 [new locus tag: EL263_RS11145 ]
- pan locus tag?: PNEUPAN003930000
- symbol: albF
- pan gene symbol?: yfmH
- synonym:
- product: Putative zinc protease AlbF
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPAT_2109 [new locus tag: EL263_RS11145 ]
- symbol: albF
- product: Putative zinc protease AlbF
- replicon: chromosome
- strand: -
- coordinates: 2077149..2078432
- length: 1284
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: AP018938 (2077149..2078432) NCBI
- BioCyc: see EL263_RS11145
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_2051 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1261ATGACAAAGGTTGTTTTTGAAGAAAAATATTATCCAGCTGTAAAAGAAATGGTTTATCGA
ACTCGTTTGGCCAACGGATTGACAGTTGCTCTTTTGCCTAAAAAGGAATTTAAAGAGGTT
TACGGGAGTGTCACTGTACAGTTTGGTTCGGTAGATACGTTTGTCACAGAAGTTGACGGA
GATGTAAAACAATATCCTGGAGGAATTGCTCATTTTCTTGAACATAAATTATTTGAGAGA
GAAGATTCTAGTGATTTGATGTCGGCTTTTACGAGTCTAGGTGCAGATAGCAATGCCTTT
ACAAGCTTTACAAAAACAAACTATCTTTTTTCAGCAACGGATTATTTTTTAGAAAATTTA
GATTTACTTGATGAATTGGTAACATCAGCACACTTTACTGAAGCTTCCATTCTGACAGAG
CAGGATATTATTCAGCAAGAACGAGAAATGTACCAAGATGATCCAGATTCGTGTTTATTC
TTTTCAACTTTAGCGAATTTGTATCCTGGTACACCTTTAGCAACTGATATAGTTGGAAGT
GAGGAGTCCATTTCCCAAATCAATCTAACTAATTTGCAAGAAAATTTTACAAAGTTTTAC
AAACCTGTAAACATGTCTCTGTTTTTAGTTGGTAATTTTGATGTGGAGCGAGTACAGGAC
TATTTTGAAAGCAAAGAACTGAAAGATTCAGATTTTCAGGAAGTAGCAAGAGAAAAGTTG
TTTTTACAGCCTGTAAAGCTAACAGATAGTATGAGAATGGAAGTATCTTCTCCCAAACTA
GCGATTGGAGTTAGAGGTAAGCGAGAAGTTTCTGAAGCGGATTGCTATCGACATCATATT
TTATTAAAATTATTGTTTGCAATGATGTTTGGTTGGACTTCGGATCGTTTTCAAAAATGT
TATGAATCAGGTAAAATTGATGCGTCCTTATCTCTGGAAGTTGAAATAACAAGTCGCTTT
CATTTTGTCATGTTGACAATGGATACGAAAGAGCCAGTTGCTTTGTCTCATCAATTTAGG
AAGGCTATTCGTAATTTTACAAAGGATTTAGATATTACAGAGGAACATTTAGATATTATC
AAAAGAGAGATGTTTGGCGAATTTTTCAGTAGCATGAACTCTCTTGAATTTATTGCAACG
CAATATGATGCTTTTGAAAATGGTGAGACAATTTTTGATTTGCCGAAAATTTTACAGGAA
ATTACTTTAGAGGATGTCCTTGATGCTGGACATCATTTAATAGATGATGGTGACATAGTT
GATTTTACAATATTCCCATCGTAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPAT_2109 [new locus tag: EL263_RS11145 ]
- symbol: AlbF
- description: Putative zinc protease AlbF
- length: 427
- theoretical pI: 4.35057
- theoretical MW: 48981.1
- GRAVY: -0.203747
⊟Function[edit | edit source]
- TIGRFAM: Biosynthesis of cofactors, prosthetic groups, and carriers Other coenzyme PQQ biosynthesis protein PqqF (TIGR02110; EC 3.4.24.-; HMM-score: 47.2)
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: Peptidase_ME (CL0094) Peptidase_M16; Insulinase (Peptidase family M16) (PF00675; HMM-score: 54)Peptidase_M16_C; Peptidase M16 inactive domain (PF05193; HMM-score: 53.6)and 1 moreno clan defined DUF3770; Protein of unknown function (DUF3770) (PF12603; HMM-score: 13.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9602
- Cytoplasmic Membrane Score: 0.0155
- Cell wall & surface Score: 0.0001
- Extracellular Score: 0.0242
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.01446
- TAT(Tat/SPI): 0.001901
- LIPO(Sec/SPII): 0.001112
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: BBG40112 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MTKVVFEEKYYPAVKEMVYRTRLANGLTVALLPKKEFKEVYGSVTVQFGSVDTFVTEVDGDVKQYPGGIAHFLEHKLFEREDSSDLMSAFTSLGADSNAFTSFTKTNYLFSATDYFLENLDLLDELVTSAHFTEASILTEQDIIQQEREMYQDDPDSCLFFSTLANLYPGTPLATDIVGSEESISQINLTNLQENFTKFYKPVNMSLFLVGNFDVERVQDYFESKELKDSDFQEVAREKLFLQPVKLTDSMRMEVSSPKLAIGVRGKREVSEADCYRHHILLKLLFAMMFGWTSDRFQKCYESGKIDASLSLEVEITSRFHFVMLTMDTKEPVALSHQFRKAIRNFTKDLDITEEHLDIIKREMFGEFFSSMNSLEFIATQYDAFENGETIFDLPKILQEITLEDVLDAGHHLIDDGDIVDFTIFPS
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_2051 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]