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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 02-MAY-2018

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae D39
  • locus tag: SPD_1025 [new locus tag: SPD_RS05510 ]
  • pan locus tag?: PNEUPAN002386000
  • symbol: lpdA
  • pan gene symbol?: acoL
  • synonym:
  • product: dihydrolipoamide dehydrogenase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPD_1025 [new locus tag: SPD_RS05510 ]
  • symbol: lpdA
  • product: dihydrolipoamide dehydrogenase
  • replicon: chromosome
  • strand: -
  • coordinates: 1049806..1051491
  • length: 1686
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    ATGCCAAAAGCCGGCGTGGATATGACAGAAGGACAAATCGTCCAATGGAATAAAAAAGTC
    GGAGAATTTGTAAAAGAAGGAGAAATCCTTTTGGAAATCATGACTGATAAAGTCAGCATG
    GAATTGGAAGCCGAAGAAGATGGGTACTTGATTGCCATTCTCAAAGGAGATGGTGAAACT
    GTCCCTGTAACGGAAGTTATCGGTTACCTTGGTGAAGAAAGGGAAAACATCCCAACAGCT
    GGAGCAGCATCGCCAGAAGCTAGCCCTGTACCTGTAGCAAGTACCTCAAACGATGATGGT
    AAGAGCGATGATGCTTTTGATATCGTTGTGATTGGTGGAGGTCCTGCTGGTTATGTTGCA
    GCCATTAAAGCTGCCCAATTCGGCGGTAAGGTTGCCCTTGTTGAGAAATCTGAACTTGGT
    GGAACCTGCTTAAACCGTGGATGTATTCCAACCAAGACCTACCTTCATAACGCTGAAATT
    ATTGAAAATATCGGTCATGCTGCAAATCGTGGTATCGTGATTGAAAATCCTAACTTCACT
    GTTGATATGGAAAAACTTTTAGAAACTAAATCTAAAGTTGTTAATACTCTTGTTGGTGGT
    GTTGCAGGACTTCTTCGTAGCTACGGAGTTACTGTTCATAAAGGAATTGGTACAATCACT
    AAAGACAAGAACGTCTTGGTAAATGGTTCTGAATTGCTTGAAACCAAGAAAATCATTCTT
    GCTGGTGGTTCAAAAGTCAGCAAGATCAACGTCCCTGGTATGGAATCTCCACTTGTCATG
    ACTAGTGATGACATTCTTGAAATGAACGAAGTGCCAGAAAGCCTTGTTATCATCGGTGGT
    GGAGTTGTCGGTATCGAACTCGGTCAGGCCTTCATGACATTTGGTTCAAAAGTGACTGTT
    ATCGAAATGATGGACCGTATAGTTCCAGCTATGGATGTGGAAGTTTCTAAGAACCTTCGC
    TTGATCCTTGAGCGTAAAGGAATGACCATCTTGACTGGTACTAAACTGCAAGAAATCATT
    GAGGAAAATGGTCAACTTCGTATCAAGGTTGAAGGAAAAGACGATATCATCGCAAGCAAA
    GCTCTTCTTTCAATTGGTCGTATGCCAGACCTTGAAGGTATTGGAGAGGTTGAGTTTGAA
    TTGGATCGTGGTTGTATCAAGGTCAACGAATACATGGAAACTTCAGTTCCAGGCATTTAT
    GCACCAGGTGACATCAACGGTACTAAGATGTTGGCTCACGCAGCTTTCCGCATGGGTGAA
    GTTTCCGCTGAAAATGCCCTTAAAGGAAATCATGCAGTTGCCAAATTGAATTTGACTCCT
    GCAGCCATCTACACTCTCCCTGAAGTAGCAGCAGTAGGTTTGACAGAAGAACAAGCCCGT
    GAGAAATACGATGTTGCCATCGGTAAGTTTAACTTTGCTGCTAACGGTCGTGCTATTGCA
    TCTGACGCAGCTCAAGGTTTCGTAAAAGTTATCGCTGATAAGAAATACGGAGAAATCCTT
    GGTGTACACATTATTGGTCCTGCAGCCGCAGAATTAATAAACGAAGCATCAAGCATCATC
    GAAATGGAAATCACTGTTGAGGAAATGCTGAAGACCATCCACGGGCACCCAACTTACTCT
    GAAGTGATGTACGAAGCGTTTGCAGATGTTCTAGGAATGGCCATCCATTCACCTAAGAAA
    AAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1686

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPD_1025 [new locus tag: SPD_RS05510 ]
  • symbol: LpdA
  • description: dihydrolipoamide dehydrogenase
  • length: 561
  • theoretical pI: 4.5896
  • theoretical MW: 59758.5
  • GRAVY: 0.0566845

⊟Function[edit | edit source]

  • reaction:
    EC 1.8.1.4?  ExPASy
    Dihydrolipoyl dehydrogenase Protein N6-(dihydrolipoyl)lysine + NAD+ = protein N6-(lipoyl)lysine + NADH
  • TIGRFAM:
    dihydrolipoyl dehydrogenase (TIGR01350; EC 1.8.1.4; HMM-score: 563.6)
    and 53 more
    Cellular processes Cellular processes Detoxification mercury(II) reductase (TIGR02053; EC 1.16.1.1; HMM-score: 333.8)
    Metabolism Energy metabolism Electron transport glutathione-disulfide reductase (TIGR01424; EC 1.8.1.7; HMM-score: 255.9)
    Metabolism Energy metabolism Electron transport glutathione-disulfide reductase (TIGR01421; EC 1.8.1.7; HMM-score: 236.4)
    mycothione reductase (TIGR03452; EC 1.8.1.15; HMM-score: 216.2)
    thioredoxin and glutathione reductase (TIGR01438; EC 1.6.4.-; HMM-score: 165.2)
    trypanothione-disulfide reductase (TIGR01423; EC 1.8.1.12; HMM-score: 161.1)
    Cellular processes Cellular processes Detoxification CoA-disulfide reductase (TIGR03385; EC 1.8.1.14; HMM-score: 95.3)
    Cellular processes Cellular processes Detoxification alkyl hydroperoxide reductase subunit F (TIGR03140; EC 1.8.1.-; HMM-score: 65.3)
    Cellular processes Cellular processes Adaptations to atypical conditions alkyl hydroperoxide reductase subunit F (TIGR03140; EC 1.8.1.-; HMM-score: 65.3)
    Metabolism Energy metabolism Electron transport thioredoxin-disulfide reductase (TIGR01292; EC 1.8.1.9; HMM-score: 63.1)
    Metabolism Energy metabolism TCA cycle dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex (TIGR01347; EC 2.3.1.61; HMM-score: 61.9)
    Metabolism Energy metabolism Pyruvate dehydrogenase pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase (TIGR01349; EC 2.3.1.12; HMM-score: 60.6)
    Metabolism Central intermediary metabolism Nitrogen metabolism nitrite reductase [NAD(P)H], large subunit (TIGR02374; EC 1.7.1.4; HMM-score: 59.9)
    Unknown function Enzymes of unknown specificity putative bacillithiol system oxidoreductase, YpdA family (TIGR04018; EC 1.8.-.-; HMM-score: 49.4)
    2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase (TIGR02927; EC 2.3.1.61; HMM-score: 47.5)
    pyridine nucleotide-disulfide oxidoreductase family protein (TIGR03169; HMM-score: 41.4)
    putative alkyl hydroperoxide reductase F subunit (TIGR03143; EC 1.6.4.-; HMM-score: 40.5)
    mycofactocin system FadH/OYE family oxidoreductase 2 (TIGR03997; EC 1.-.-.-; HMM-score: 38.9)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Chlorophyll and bacteriochlorphyll geranylgeranyl reductase family (TIGR02032; EC 1.3.1.-; HMM-score: 32.5)
    Metabolism Amino acid biosynthesis Glutamate family glutamate synthase (NADPH), homotetrameric (TIGR01316; EC 1.4.1.13; HMM-score: 29.9)
    glutamate synthase, NADH/NADPH, small subunit (TIGR01317; EC 1.4.1.-; HMM-score: 27.4)
    Unknown function Enzymes of unknown specificity flavoprotein, HI0933 family (TIGR00275; HMM-score: 26.7)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides UDP-galactopyranose mutase (TIGR00031; EC 5.4.99.9; HMM-score: 25.8)
    Metabolism Energy metabolism Pyruvate dehydrogenase dihydrolipoyllysine-residue acetyltransferase (TIGR01348; EC 2.3.1.12; HMM-score: 23)
    Metabolism Energy metabolism Amino acids and amines sarcosine oxidase, alpha subunit family (TIGR01372; HMM-score: 23)
    mycofactocin system FadH/OYE family oxidoreductase 1 (TIGR03996; EC 1.-.-.-; HMM-score: 22.5)
    FAD dependent oxidoreductase TIGR03364 (TIGR03364; HMM-score: 22.4)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Pyridine nucleotides L-aspartate oxidase (TIGR00551; EC 1.4.3.16; HMM-score: 20.9)
    putative selenate reductase, YgfK subunit (TIGR03315; HMM-score: 20.7)
    Metabolism Energy metabolism Anaerobic glycerol-3-phosphate dehydrogenase, anaerobic, B subunit (TIGR03378; EC 1.1.5.3; HMM-score: 19.9)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Chlorophyll and bacteriochlorphyll geranylgeranyl reductase (TIGR02023; EC 1.3.1.-; HMM-score: 19.1)
    Metabolism Energy metabolism Electron transport flavocytochrome c (TIGR01813; HMM-score: 17.5)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Menaquinone and ubiquinone 2-polyprenyl-6-methoxyphenol 4-hydroxylase (TIGR01984; EC 1.14.13.-; HMM-score: 16.2)
    Metabolism Energy metabolism Amino acids and amines alanine dehydrogenase (TIGR00518; EC 1.4.1.1; HMM-score: 15.7)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Thiamine thiazole biosynthesis enzyme (TIGR00292; HMM-score: 15.6)
    squalene-associated FAD-dependent desaturase (TIGR03467; HMM-score: 15.6)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Menaquinone and ubiquinone ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family (TIGR01988; EC 1.14.13.-; HMM-score: 15.1)
    Metabolism Energy metabolism TCA cycle succinate dehydrogenase, flavoprotein subunit (TIGR01816; HMM-score: 15)
    Metabolism Transport and binding proteins Cations and iron carrying compounds oxaloacetate decarboxylase alpha subunit (TIGR01108; EC 4.1.1.3; HMM-score: 14.6)
    Metabolism Energy metabolism Other oxaloacetate decarboxylase alpha subunit (TIGR01108; EC 4.1.1.3; HMM-score: 14.6)
    Genetic information processing Protein synthesis tRNA and rRNA base modification tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA (TIGR00136; HMM-score: 14.1)
    nucleotide sugar dehydrogenase (TIGR03026; HMM-score: 13.9)
    Metabolism Energy metabolism Amino acids and amines sarcosine oxidase, monomeric form (TIGR01377; HMM-score: 13.6)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Chlorophyll and bacteriochlorphyll geranylgeranyl reductase (TIGR02028; HMM-score: 13)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Heme, porphyrin, and cobalamin precorrin 3B synthase CobZ (TIGR02485; HMM-score: 13)
    Genetic information processing Protein synthesis tRNA and rRNA base modification tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain (TIGR03197; HMM-score: 12.2)
    lycopene cyclase family protein (TIGR01790; HMM-score: 11.6)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Thiamine glycine oxidase ThiO (TIGR02352; EC 1.4.3.19; HMM-score: 11.3)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Other phytoene desaturase (TIGR02734; EC 1.14.99.-; HMM-score: 9.6)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Other C-3',4' desaturase CrtD (TIGR02733; EC 1.3.99.-; HMM-score: 9.1)
    Metabolism Energy metabolism TCA cycle succinate dehydrogenase or fumarate reductase, flavoprotein subunit (TIGR01812; HMM-score: 8.4)
    Metabolism Energy metabolism Anaerobic succinate dehydrogenase or fumarate reductase, flavoprotein subunit (TIGR01812; HMM-score: 8.4)
    Metabolism Energy metabolism Aerobic succinate dehydrogenase or fumarate reductase, flavoprotein subunit (TIGR01812; HMM-score: 8.4)
  • TheSEED  :
    • Dihydrolipoamide dehydrogenase of acetoin dehydrogenase (EC 1.8.1.4)
    Carbohydrates Central carbohydrate metabolism Dehydrogenase complexes  Dihydrolipoamide dehydrogenase of acetoin dehydrogenase (EC 1.8.1.4)
    and 1 more
    Carbohydrates Fermentation Acetoin, butanediol metabolism  Dihydrolipoamide dehydrogenase of acetoin dehydrogenase (EC 1.8.1.4)
  • PFAM:
    NADP_Rossmann (CL0063) Pyr_redox_2; Pyridine nucleotide-disulphide oxidoreductase (PF07992; HMM-score: 206.9)
    and 22 more
    Reductase_C (CL0608) Pyr_redox_dim; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain (PF02852; HMM-score: 123)
    NADP_Rossmann (CL0063) Pyr_redox; Pyridine nucleotide-disulphide oxidoreductase (PF00070; HMM-score: 77.2)
    Hybrid (CL0105) Biotin_lipoyl; Biotin-requiring enzyme (PF00364; HMM-score: 65.1)
    NADP_Rossmann (CL0063) Pyr_redox_3; Pyridine nucleotide-disulphide oxidoreductase (PF13738; HMM-score: 58.7)
    GIDA; Glucose inhibited division protein A (PF01134; HMM-score: 38.7)
    FAD_oxidored; FAD dependent oxidoreductase (PF12831; HMM-score: 36.4)
    FAD_binding_2; FAD binding domain (PF00890; HMM-score: 29)
    DAO; FAD dependent oxidoreductase (PF01266; HMM-score: 27.5)
    HI0933_like; HI0933-like protein (PF03486; HMM-score: 25.4)
    NAD_binding_8; NAD(P)-binding Rossmann-like domain (PF13450; HMM-score: 23.6)
    NAD_binding_7; Putative NAD(P)-binding (PF13241; HMM-score: 21.4)
    Trp_halogenase; Tryptophan halogenase (PF04820; HMM-score: 19.9)
    FAD_binding_3; FAD binding domain (PF01494; HMM-score: 19.8)
    AlaDh_PNT_C; Alanine dehydrogenase/PNT, C-terminal domain (PF01262; HMM-score: 19.4)
    Hybrid (CL0105) Biotin_lipoyl_2; Biotin-lipoyl like (PF13533; HMM-score: 16.7)
    NADP_Rossmann (CL0063) Thi4; Thi4 family (PF01946; HMM-score: 16.5)
    3HCDH_N; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain (PF02737; HMM-score: 15.9)
    Hybrid (CL0105) HlyD_3; HlyD family secretion protein (PF13437; HMM-score: 14.6)
    NADP_Rossmann (CL0063) TrkA_N; TrkA-N domain (PF02254; HMM-score: 13.5)
    Lycopene_cycl; Lycopene cyclase protein (PF05834; HMM-score: 12.9)
    Hybrid (CL0105) PYNP_C; Pyrimidine nucleoside phosphorylase C-terminal domain (PF07831; HMM-score: 12.7)
    NADP_Rossmann (CL0063) UDPG_MGDP_dh_N; UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain (PF03721; HMM-score: 12.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9828
    • Cytoplasmic Membrane Score: 0.0024
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0148
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00226
    • TAT(Tat/SPI): 0.0001
    • LIPO(Sec/SPII): 0.000208
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MPKAGVDMTEGQIVQWNKKVGEFVKEGEILLEIMTDKVSMELEAEEDGYLIAILKGDGETVPVTEVIGYLGEERENIPTAGAASPEASPVPVASTSNDDGKSDDAFDIVVIGGGPAGYVAAIKAAQFGGKVALVEKSELGGTCLNRGCIPTKTYLHNAEIIENIGHAANRGIVIENPNFTVDMEKLLETKSKVVNTLVGGVAGLLRSYGVTVHKGIGTITKDKNVLVNGSELLETKKIILAGGSKVSKINVPGMESPLVMTSDDILEMNEVPESLVIIGGGVVGIELGQAFMTFGSKVTVIEMMDRIVPAMDVEVSKNLRLILERKGMTILTGTKLQEIIEENGQLRIKVEGKDDIIASKALLSIGRMPDLEGIGEVEFELDRGCIKVNEYMETSVPGIYAPGDINGTKMLAHAAFRMGEVSAENALKGNHAVAKLNLTPAAIYTLPEVAAVGLTEEQAREKYDVAIGKFNFAANGRAIASDAAQGFVKVIADKKYGEILGVHIIGPAAAELINEASSIIEMEITVEEMLKTIHGHPTYSEVMYEAFADVLGMAIHSPKKK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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