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serotype 4
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serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
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serotype 6A
70585
serotype 5
A026
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serotype 3
AP200
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BM6001
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CGSP14
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G54
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HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 30-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae G54
  • locus tag: SPG_0784 [new locus tag: SPG_RS03960 ]
  • pan locus tag?: PNEUPAN001813000
  • symbol: rpsA
  • pan gene symbol?: rpsA
  • synonym:
  • product: 30S ribosomal protein S1

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPG_0784 [new locus tag: SPG_RS03960 ]
  • symbol: rpsA
  • product: 30S ribosomal protein S1
  • replicon: chromosome
  • strand: +
  • coordinates: 758264..759466
  • length: 1203
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    ATGAACGAATTTGAAGATTTGCTAAATAGCGTTAGTCAAGTTGAGACTGGTGATGTTGTT
    AGTGCTGAAGTATTGACAGTTGATGCGACTCAAGCTAACGTTGCAATCTCTGGAACTGGT
    GTTGAAGGTGTCTTGACTCTTCGCGAATTGACAAACGATCGTGATGCAGATATCAATGAC
    TTTGTTAAAGTAGGAGAAGTATTGGATGTTCTTGTACTTCGTCAAGTAGTTGGTAAAGAT
    ACTGATACAGTTACATACCTTGTATCTAAAAAACGCCTTGAAGCTCGCAAAGCATGGGAC
    AAACTTGTTGGTCGCGAAGAAGAAGTTGTTACTGTTAAAGGAACGCGTGCCGTTAAAGGT
    GGACTTTCAGTAGAATTTGAAGGTGTTCGTGGATTTATCCCAGCTTCAATGTTGGATACT
    CGTTTCGTACGTAACGCTGAGCGTTTTGTAGGTCAAGAATTTGATACTAAAATCAAAGAA
    GTTAACGCTAAAGAAAACCGCTTCATCCTTTCACGTCGTGAAGTTGTTGAAGCAGCTACT
    GCAGCAGCTCGCGCTGAAGTATTCGGTAAATTGGCTGTTGGTGATGTTGTAACTGGTAAA
    GTTGCTCGTATCACAAGCTTCGGCGCTTTCATCGACCTTGGTGGTGTTGACGGATTGGTT
    CACTTGACTGAATTGTCACATGAACGTAACGTATCACCAAAATCAGTTGTAACTGTTGGT
    GAAGAAATTGAAGTGAAAATCCTTGATCTTAACGAAGAAGAAGGACGTGTATCACTTTCA
    CTTAAAGCAACAGTACCAGGACCATGGGATGGCGTTGAGCAAAAATTGGCTAAAGGTGAT
    GTAGTAGAAGGAACAGTTAAACGTTTGACTGACTTCGGTGCATTTGTTGAAGTATTGCCA
    GGTATCGATGGACTTGTTCACGTATCACAAATTTCACACAAACGGATTGAAAATCCAAAA
    GAAGCTCTTAAAGTTGGTCAAGAAGTTCAAGTTAAAGTTCTTGAAGTTAACGCAGATGCA
    GAACGCGTATCACTTTCTATTAAAGCTCTTGAAGAACGTCCAGCCCAAGAAGAAGGACAA
    AAAGAAGAAAAACGTGCTGCTCGTCCACGTCGTCCAAGACGTCAAGAAAAGCGTGATTTC
    GAACTTCCAGAAACACAAACAGGATTTTCAATGGCTGATTTGTTTGGTGATATCGAACTT
    TAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1203

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPG_0784 [new locus tag: SPG_RS03960 ]
  • symbol: RpsA
  • description: 30S ribosomal protein S1
  • length: 400
  • theoretical pI: 4.77294
  • theoretical MW: 43895.4
  • GRAVY: -0.247

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein synthesis Ribosomal proteins: synthesis and modification ribosomal protein bS1 (TIGR00717; HMM-score: 282)
    and 8 more
    Genetic information processing Transcription Degradation of RNA polyribonucleotide nucleotidyltransferase (TIGR03591; EC 2.7.7.8; HMM-score: 125.7)
    guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase (TIGR02696; EC 2.7.-.-,2.7.7.8; HMM-score: 64.3)
    Genetic information processing Transcription Degradation of RNA ribonuclease R (TIGR02063; EC 3.1.-.-; HMM-score: 53.3)
    Genetic information processing Transcription DNA-dependent RNA polymerase DNA-directed RNA polymerase (TIGR00448; EC 2.7.7.6; HMM-score: 52.9)
    Genetic information processing Transcription Degradation of RNA VacB and RNase II family 3'-5' exoribonucleases (TIGR00358; EC 3.1.13.1; HMM-score: 30.9)
    Genetic information processing Transcription Transcription factors transcription termination factor NusA (TIGR01953; HMM-score: 28.4)
    Metabolism Energy metabolism Glycolysis/gluconeogenesis carbon storage regulator (TIGR00202; HMM-score: 18.3)
    Signal transduction Regulatory functions RNA interactions carbon storage regulator (TIGR00202; HMM-score: 18.3)
  • TheSEED  :
    • SSU ribosomal protein S1p
    Protein Metabolism Protein biosynthesis Ribosome SSU bacterial  SSU ribosomal protein S1p
  • PFAM:
    OB (CL0021) S1; S1 RNA binding domain (PF00575; HMM-score: 204.5)
    and 7 more
    S1_2; S1 domain (PF13509; HMM-score: 26.1)
    no clan defined CsrA; Global regulator protein family (PF02599; HMM-score: 21)
    OB (CL0021) EXOSC1; Exosome component EXOSC1/CSL4 (PF10447; HMM-score: 14)
    Rrp44_S1; S1 domain (PF17215; HMM-score: 11.3)
    no clan defined RsgI_N; Anti-sigma factor N-terminus (PF12791; HMM-score: 11)
    OB (CL0021) RNase_II_C_S1; RNase II-type exonuclease C-terminal S1 domain (PF18614; HMM-score: 10.8)
    TRAM; TRAM domain (PF01938; HMM-score: 8.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9761
    • Cytoplasmic Membrane Score: 0.0013
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0225
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005661
    • TAT(Tat/SPI): 0.001103
    • LIPO(Sec/SPII): 0.000501
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ACF55522 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MNEFEDLLNSVSQVETGDVVSAEVLTVDATQANVAISGTGVEGVLTLRELTNDRDADINDFVKVGEVLDVLVLRQVVGKDTDTVTYLVSKKRLEARKAWDKLVGREEEVVTVKGTRAVKGGLSVEFEGVRGFIPASMLDTRFVRNAERFVGQEFDTKIKEVNAKENRFILSRREVVEAATAAARAEVFGKLAVGDVVTGKVARITSFGAFIDLGGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLNEEEGRVSLSLKATVPGPWDGVEQKLAKGDVVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAERVSLSIKALEERPAQEEGQKEEKRAARPRRPRRQEKRDFELPETQTGFSMADLFGDIEL

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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