From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 30-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae G54
  • locus tag: SPG_0928 [new locus tag: SPG_RS04670 ]
  • pan locus tag?: PNEUPAN000197000
  • symbol: phtD
  • pan gene symbol?: phtB
  • synonym:
  • product: pneumococcal histidine triad protein D

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPG_0928 [new locus tag: SPG_RS04670 ]
  • symbol: phtD
  • product: pneumococcal histidine triad protein D
  • replicon: chromosome
  • strand: +
  • coordinates: 892234..894084
  • length: 1851
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    ATGAAAATCAATAAAAAATATGTAGCAGGTTCAGTGGCAGTTCTTGCCCTAAGTGTTTGT
    TCCTATGAACTTGGGCGTTACCAAGCTGGTCAGGATAAGAAAGAGTCTAATCGAGTTGCT
    TATATAGATGGTGATCAGGCTGGTCAAAAGGCAGAAAATTTGACACCAGATGAAGTCAGT
    AAGAGGGAGGGGATCAACGCCGAACAAATTGTTATCAAGATTACGGATCAAGGTTATGTG
    ACCTCTCATGGAGACCATTATCATTACTATAATGGCAAGGTTCCTTATGATGCCATCATC
    AGTGAAGAGCTCCTCATGAAAGATCCGAATTATCAGTTGAAGGATTCAGACATTGTCAAT
    GAAATCAAGGGTGGTTATGTCATTAAGGTAAACGGTAAATACTATGTTTACCTTAAGGAT
    GCAGCTCATGCGGATAATATTCGGACAAAAGAAGAGATTAAACGTCAGAAGCAGGAACGC
    AGTCATAATCATAACTCAAGAGCAGATAATGCTGTTGCTGCAGCCAGAGCCCAAGGACGC
    TACACCACAGATGATGGTTATATCTTTAATGCTTCTGATATCATTGAAGATACTGGTGAT
    GCCTATATCGTTCCTCATGGCAATCACTTCCACTATATTCCTAAGAGTGATTTATCTGCC
    AGTGAATTAGCTGCTGCCCAAGCCTATTGGAATGGGAAGCAGGGATCTCGTCCTTCTTCA
    AGTTCTAGTCATAATGCAAATCCAGCTCAACCAAGATTGTCAGAGAACCACAATCTGACT
    GTCACTCCAACTTATCATCAAAATCAAGGGGAAAACATTTCAAGCCTTTTACGTGAATTG
    TATGCTAAACCCTTATCAGAACGCCATGTGGAATCTGATGGCCTTATTTTCGACCCAGCG
    CAAATCACAAGTCGAACCGCCAGAGGTGTAGCTGTCCCTCATGGTAACCATTACCACTTT
    ATCCCTTATGAACAAATGTCTGAATTGGAAAAACGAATTGCTCGTATTATTCCCCTTCGT
    TATCGTTCAAACCATTGGGTACCAGATTCAAGACCAGAACAACCAAGTCCACAACCGACT
    CCAGAACCTAGTCCAAGTCCGCAACCTGCACCAAATCCTCAACCAGCTCCAAGCAATCCA
    ATTGATGAGAAATTGGTCAAAGAAGCTGTTCGAAAAGTAGGCGATGGTTATGTCTTTGAG
    GAGAATGGAGTTTCTCGTTATATCCCAGCCAAGGATCTTTCAGCAGAAACAGCAGCAGGC
    ATTGATAGCAAACTGGCCAAGCAGGAAAGTTTATCTCATAAGCTAGGAGCTAAGAAAACT
    GACCTCCCATCTAGTGATCGAGAATTTTACAATAAGGCTTATGACTTACTAGCAAGAATT
    CACCAAGATTTACTTGATAATAAAGGTCGACAAGTTGATTTTGAGGCTTTGGATAACCTG
    TTGGAACGACTCAAGGATGTCTCAAGTGATAAAGTCAAGTTAGTGGATGATATTCTTGCC
    TTCTTAGCTCCGATTCGTCATCCAGAACGTTTAGGAAAACCAAATGCGCAAATTACCTAC
    ACTGATGATGAGATTCAAGTAGCCAAGTTGGCAGGCAAGTACACAACAGAAGACGGTTAT
    ATCTTTGATCCTCGTGATATAACCAGTGATGAGGGGGATGCCTATGTAACTCCACATATG
    ACCCATAGCCACTGGATTAAAAAAGATAGTTTGTCTGAAGCTGAAAGAGCGGCAGCCCAG
    GCTTATGCTAAAGAGAAAGGTTTGACCCCTCCTTCGACAGACCATCAGGATTCAGGAAAT
    ACTGAGGCAAAAGGAGCAGAAGCTATCTTACAACCGCGTGAAAGCAGCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1851

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPG_0928 [new locus tag: SPG_RS04670 ]
  • symbol: PhtD
  • description: pneumococcal histidine triad protein D
  • length: 616
  • theoretical pI: 6.31091
  • theoretical MW: 68659.5
  • GRAVY: -0.809091

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Pathogenesis streptococcal histidine triad protein (TIGR01363; HMM-score: 711.4)
  • TheSEED  :
    • Streptococcal histidine triad protein
  • PFAM:
    no clan defined Strep_his_triad; Streptococcal histidine triad protein (PF04270; HMM-score: 250.4)
    and 3 more
    PHtD_u1; Unstructured region on Pneumococcal histidine triad protein (PF16645; HMM-score: 75.9)
    YgaC_TfoX-N (CL0631) DUF2002; Protein of unknown function (DUF2002) (PF09400; HMM-score: 9.6)
    no clan defined Trypan_PARP; Procyclic acidic repetitive protein (PARP) (PF05887; HMM-score: 6.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • SignalP: Signal peptide LIPO(Sec/SPII) length 19 aa
    • SP(Sec/SPI): 0.095927
    • TAT(Tat/SPI): 0.000535
    • LIPO(Sec/SPII): 0.886743
    • Cleavage Site: CS pos: 19-20. LSV-CS. Pr: 0.8793
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ACF55875 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKINKKYVAGSVAVLALSVCSYELGRYQAGQDKKESNRVAYIDGDQAGQKAENLTPDEVSKREGINAEQIVIKITDQGYVTSHGDHYHYYNGKVPYDAIISEELLMKDPNYQLKDSDIVNEIKGGYVIKVNGKYYVYLKDAAHADNIRTKEEIKRQKQERSHNHNSRADNAVAAARAQGRYTTDDGYIFNASDIIEDTGDAYIVPHGNHFHYIPKSDLSASELAAAQAYWNGKQGSRPSSSSSHNANPAQPRLSENHNLTVTPTYHQNQGENISSLLRELYAKPLSERHVESDGLIFDPAQITSRTARGVAVPHGNHYHFIPYEQMSELEKRIARIIPLRYRSNHWVPDSRPEQPSPQPTPEPSPSPQPAPNPQPAPSNPIDEKLVKEAVRKVGDGYVFEENGVSRYIPAKDLSAETAAGIDSKLAKQESLSHKLGAKKTDLPSSDREFYNKAYDLLARIHQDLLDNKGRQVDFEALDNLLERLKDVSSDKVKLVDDILAFLAPIRHPERLGKPNAQITYTDDEIQVAKLAGKYTTEDGYIFDPRDITSDEGDAYVTPHMTHSHWIKKDSLSEAERAAAQAYAKEKGLTPPSTDHQDSGNTEAKGAEAILQPRESS

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPG_0928&oldid=73915"