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JJA
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serotype 4
OXC141
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serotype 3
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SPN994038
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SPN994039
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SPNA45
serotype 3
ST556
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TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 30-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae G54
  • locus tag: SPG_1109 [new locus tag: SPG_RS05590 ]
  • pan locus tag?: PNEUPAN002484000
  • symbol: SPG_1109
  • pan gene symbol?: nirC
  • synonym:
  • product: transporter, FNT family protein, putative

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPG_1109 [new locus tag: SPG_RS05590 ]
  • symbol: SPG_1109
  • product: transporter, FNT family protein, putative
  • replicon: chromosome
  • strand: -
  • coordinates: 1086450..1087247
  • length: 798
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGATTTCTTCAGAATTTATCTCAAAGATTGAATTTGCTTGCAATAAGAAAGAAAGTCTT
    TATAGTCAAAGCAAATTTAAGTATGCGATTCGTTCGATGTTCGCAGGTGCATTTTTAACC
    TTCAGTACTGCTGCAGGTGCAGTTGGGGCTGACTTGATTAATAAAATTGCACCAGGTAGT
    GGACGCTTCCTCTTTCCATTCGTTTTTGCTTGGGGCTTGGCCTACATTGTTTTTTTGAAT
    GCCGAGTTGGTCACTTCAAACATGATGTTCTTGACTGCTGGTAGTTTCTTAAAAAAAATC
    TCTTGGAGAAAAACAGCTGAGATTTTACTATACTGTACCTTGTTCAACCTTATCGGAGCC
    TTGATAGCAGGGTGGGGCTTTGCTCATTCGGCAGCCTATGCGAATCTGACACACGATAGT
    TTCATCTCAGGTGTTGTTGAGATGAAGTTAGGCCGCTCAAATGAATTGGTCTTGCTTGAG
    GCGATTTTGGCAAATATTTTCGTAAATATTGCGATTCTGTCATTTATTTTGGTCAAAGAT
    GGTGGTGCCAAACTTTGGCTTGTGTTGTCAGCTATTTACATGTTTGTATTCTTAACAAAC
    GAGCACATTGCGGCGAACTTTGCTTCTTTCGCGATTGTGAAATTCAGTGTTGCTGCGGAT
    TCAATTGCCAACTTCGGTGTTGGAAATATGCTTCGCCACTGGGGTGTGACTTTCATCGGA
    AACTTTATCGGAGGAGGCCTCTTGATGGGTCTTCCATATGCCTTCCTCAATAAAAACGAA
    GATACTTATGTAGATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    798

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPG_1109 [new locus tag: SPG_RS05590 ]
  • symbol: SPG_1109
  • description: transporter, FNT family protein, putative
  • length: 265
  • theoretical pI: 8.99001
  • theoretical MW: 28971.8
  • GRAVY: 0.701887

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Anions formate/nitrite transporter (TIGR00790; HMM-score: 103.5)
    and 2 more
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids formate transporter FocA (TIGR04060; HMM-score: 72.2)
    cobalt transporter subunit CbtB (proposed) (TIGR02459; HMM-score: 13.6)
  • TheSEED  :
    • Formate/nitrite transporter family protein
  • PFAM:
    Aquaporin-like (CL0716) Form_Nir_trans; Formate/nitrite transporter (PF01226; HMM-score: 141)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 7
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.300512
    • TAT(Tat/SPI): 0.121648
    • LIPO(Sec/SPII): 0.016152
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ACF55233 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MISSEFISKIEFACNKKESLYSQSKFKYAIRSMFAGAFLTFSTAAGAVGADLINKIAPGSGRFLFPFVFAWGLAYIVFLNAELVTSNMMFLTAGSFLKKISWRKTAEILLYCTLFNLIGALIAGWGFAHSAAYANLTHDSFISGVVEMKLGRSNELVLLEAILANIFVNIAILSFILVKDGGAKLWLVLSAIYMFVFLTNEHIAANFASFAIVKFSVAADSIANFGVGNMLRHWGVTFIGNFIGGGLLMGLPYAFLNKNEDTYVD

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulators: Rex* (repression) regulon, CcpA* regulon
    Rex*(TF)important in Energy metabolism; RegPrecise 
    CcpA*(TF)important in Global catabolite repression; RegPrecise 

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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