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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 31-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae Hungary19A-6
- locus tag: SPH_1283 [new locus tag: SPH_RS06210 ]
- pan locus tag?: PNEUPAN002395000
- symbol: ung
- pan gene symbol?: ung
- synonym:
- product: uracil-DNA glycosylase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPH_1283 [new locus tag: SPH_RS06210 ]
- symbol: ung
- product: uracil-DNA glycosylase
- replicon: chromosome
- strand: -
- coordinates: 1190896..1191549
- length: 654
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP000936 (1190896..1191549) NCBI
- BioCyc: see SPH_RS06210
- MicrobesOnline: 5696113 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_1032 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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601ATGGAACACTCGTCTTGGCATGCTTTGATTAAGGCGCAATTACCTGAGGGGTATTTCGGG
AAAATCAATCAGTTTATGAATCAGGTCTATGTTCAGGGGACTGTTTATCCGCCCAAAGAA
AAGGTTTTTCAGGCTCTCTTGACAACACCGCTTGAAGAAGTTAAGGTGGTGATTCTAGGG
CAAGACCCCTATCACGGGCCAGGTCAAGCGCAGGGCTTGAGTTTTTCTGTACCTGACTCT
ATCCCAGCTCCGCCATCCTTACAAAATATCTTGAAAGAATTGTCAGATGATCTTGGCGTT
AAGAAATCTCATGATTTGACAGCTTGGGCTGAGCAAGGAGTCTTGCTTCTTAATGCTTGT
CTGACGGTTCCTGCTGGACAGGCCAATGGTCATGCTGGTCAGATATGGGAGCCCTTTACT
GATGCTGTGATTCAGGTGGTCAATCATCTAGATAGACCAGTCGTTTTTGTGCTCTGGGGA
GCTTATGCACGCAAGAAGAAGGCCTTGGTTACCAATCCTCACCACTTGATCATCGAATCA
GCCCATCCCAGTCCTTTATCTGTTTACAGAGGATTTTGGGGTTCCAAGCCTTTTTCCAAG
GCCAATGCATTCTTAAAAGAGACAGGACAAGAGCCAATCGATTGGCTTAGATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPH_1283 [new locus tag: SPH_RS06210 ]
- symbol: Ung
- description: uracil-DNA glycosylase
- length: 217
- theoretical pI: 7.34538
- theoretical MW: 24004.3
- GRAVY: -0.152995
⊟Function[edit | edit source]
- reaction: EC 3.2.2.-? ExPASy
- TIGRFAM: DNA metabolism DNA replication, recombination, and repair uracil-DNA glycosylase (TIGR00628; EC 3.2.2.27; HMM-score: 252.9)
- TheSEED :
- Uracil-DNA glycosylase, family 1
and 1 more - PFAM: no clan defined UDG; Uracil DNA glycosylase superfamily (PF03167; HMM-score: 81)and 1 moreDUF6549; Family of unknown function (DUF6549) (PF20186; HMM-score: 13.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.67
- Cytoplasmic Membrane Score: 0.01
- Cellwall Score: 0.15
- Extracellular Score: 0.17
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.994
- Cytoplasmic Membrane Score: 0.0007
- Cell wall & surface Score: 0.0003
- Extracellular Score: 0.0049
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.003778
- TAT(Tat/SPI): 0.000324
- LIPO(Sec/SPII): 0.000353
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MEHSSWHALIKAQLPEGYFGKINQFMNQVYVQGTVYPPKEKVFQALLTTPLEEVKVVILGQDPYHGPGQAQGLSFSVPDSIPAPPSLQNILKELSDDLGVKKSHDLTAWAEQGVLLLNACLTVPAGQANGHAGQIWEPFTDAVIQVVNHLDRPVVFVLWGAYARKKKALVTNPHHLIIESAHPSPLSVYRGFWGSKPFSKANAFLKETGQEPIDWLR
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: SPH_1281 < SPH_1282 < ung < SPH_1284
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1032 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]