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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae Hungary19A-6
  • locus tag: SPH_1800 [new locus tag: SPH_RS08775 ]
  • pan locus tag?: PNEUPAN003115000
  • symbol: SPH_1800
  • pan gene symbol?: axe1
  • synonym:
  • product: xylan esterase 1

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPH_1800 [new locus tag: SPH_RS08775 ]
  • symbol: SPH_1800
  • product: xylan esterase 1
  • replicon: chromosome
  • strand: -
  • coordinates: 1665141..1666121
  • length: 981
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGAAAAATCCAGCTTTGCTAGAAGAAATTAAGACCTATAGAGGAAGGGATGAGGTTCCG
    GAAGACTTTGATGATTTCTGGGATGGGGAAGTGAAAAATGTTTCCACGCTTCCATCCTAC
    CACTTGGAGGAAAGAGATTTCCACATTCCTCAAGTCAAGTGCTATGAGTTAACATTTGAA
    GGAAGCAAGGAAGGAAAGGTCTATGCACGCATTGTTCTTCCAAAGAGTGAGGAGAAGGTT
    CCACTAATCTTCCATTTTCATGGTTATATGGGACGTGGCTGGGACTGGGCCGACATGCTG
    GGCTTCACCGTAGCTGGTTACGGTGTTGTTTCCATGGATGTGCGGGGCCAGTCAGGTTAC
    TCACAAGACGGCTTGCGTTCTCCTTTAGGAAATACCGTGAAGGGGCATATTATCCGTGGT
    GCTATGGAAGGTCGGGACCACCTCTTTTATAAGGATGTTTATCTGGATATTTACCAGTTG
    GTCGAAATTGTTGCTAGTCTGTCTCAGGTTGATGAGAAGCGTCTTTCTAGCTATGGTGCC
    TCACAAGGAGGGGCTCTAGCTCTAGTTGCAGCAGCGCTCAATCCTCGAATTCAGAAAACA
    GTTGCCATTTATCCCTTCTTGTCAGACTTCAGACGGGTGATTGAGATTGGTAATACTAGC
    GAGGCTTACGACGAACTTTTCCGTTATTTCAAGTTTCACGACCCCTTCCATGAAACAGAG
    GAGGAAATCATGGCGACCCTTGCCTATATCGATGTCAAAAATCTTGCCCATCGTATCCAA
    GGTGAGGTTAAGATGATTACGGGCTTGGACGACGATGTTTGCTATCCCATTACCCAGTTT
    GCGATTTATAATCGTCTGACCTGCGATAAAACCTATCGCATCATGCCTGAGTATGCTCAC
    GAAGCTATGAATGTATTTGTCAATGACCAAGTCTACAACTGGCTCTGTGGAAGTGAGATT
    CCTTTTAAATATCTAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    981

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPH_1800 [new locus tag: SPH_RS08775 ]
  • symbol: SPH_1800
  • description: xylan esterase 1
  • length: 326
  • theoretical pI: 5.03275
  • theoretical MW: 37489.3
  • GRAVY: -0.303374

⊟Function[edit | edit source]

  • TIGRFAM:
    Unknown function Enzymes of unknown specificity hydrolase CocE/NonD family protein (TIGR00976; HMM-score: 16.5)
    Metabolism Fatty acid and phospholipid metabolism Biosynthesis poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit (TIGR01836; HMM-score: 16.3)
    and 2 more
    Cellular processes Cellular processes Detoxification S-formylglutathione hydrolase (TIGR02821; EC 3.1.2.12; HMM-score: 12.5)
    Metabolism Energy metabolism Photosynthesis putative magnesium chelatase accessory protein (TIGR03056; HMM-score: 12)
  • TheSEED  :
    • FIG01116388: hypothetical protein
  • PFAM:
    AB_hydrolase (CL0028) AXE1; Acetyl xylan esterase (AXE1) (PF05448; HMM-score: 469.2)
    and 10 more
    Peptidase_S9; Prolyl oligopeptidase family (PF00326; HMM-score: 38.4)
    Hydrolase_4; Serine aminopeptidase, S33 (PF12146; HMM-score: 33.7)
    Peptidase_S15; X-Pro dipeptidyl-peptidase (S15 family) (PF02129; HMM-score: 26.6)
    DLH; Dienelactone hydrolase family (PF01738; HMM-score: 23.1)
    Abhydrolase_6; Alpha/beta hydrolase family (PF12697; HMM-score: 20.8)
    Abhydrolase_1; alpha/beta hydrolase fold (PF00561; HMM-score: 20.3)
    Abhydrolase_3; alpha/beta hydrolase fold (PF07859; HMM-score: 13)
    Esterase; Putative esterase (PF00756; HMM-score: 12.8)
    BAAT_C; BAAT / Acyl-CoA thioester hydrolase C terminal (PF08840; HMM-score: 12.5)
    PhoPQ_related; PhoPQ-activated pathogenicity-related protein (PF10142; HMM-score: 11.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9549
    • Cytoplasmic Membrane Score: 0.014
    • Cell wall & surface Score: 0.0006
    • Extracellular Score: 0.0304
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005441
    • TAT(Tat/SPI): 0.001454
    • LIPO(Sec/SPII): 0.000992
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKNPALLEEIKTYRGRDEVPEDFDDFWDGEVKNVSTLPSYHLEERDFHIPQVKCYELTFEGSKEGKVYARIVLPKSEEKVPLIFHFHGYMGRGWDWADMLGFTVAGYGVVSMDVRGQSGYSQDGLRSPLGNTVKGHIIRGAMEGRDHLFYKDVYLDIYQLVEIVASLSQVDEKRLSSYGASQGGALALVAAALNPRIQKTVAIYPFLSDFRRVIEIGNTSEAYDELFRYFKFHDPFHETEEEIMATLAYIDVKNLAHRIQGEVKMITGLDDDVCYPITQFAIYNRLTCDKTYRIMPEYAHEAMNVFVNDQVYNWLCGSEIPFKYLK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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