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serotype 4
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serotype 2
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serotype 19A
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serotype 19F
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serotype 6B
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serotype 6A
70585
serotype 5
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AP200
serotype 11A
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HU-OH
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serotype 19A
Hu17
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INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae JJA
  • locus tag: SPJ_0842 [new locus tag: SPJ_RS04210 ]
  • pan locus tag?: PNEUPAN001877000
  • symbol: SPJ_0842
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPJ_0842 [new locus tag: SPJ_RS04210 ]
  • symbol: SPJ_0842
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 813265..813855
  • length: 591
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    TTGAAATCATGGTTTAAAAATGAGATTGTAGAGGAAGAATCTATCTGTCTGATAGGTCAT
    TCTATTGGAGGCGATTTAGCTCGTTATTTCGCATCGGAATTTGAAGAAGTAAAGAAACTG
    ATTCTTTTGGATGGTGGCTATCTAGATTTAGATAAGATTTTACCTTTGGATACAGAGTTA
    GAGGAAACTAAAAATTATATCAAATCTCAAATTATTTCGGACTTAGATGTTCTTACTTCT
    AAAGAAAAATCTGAAGCAAAGCATTGGTCAGAAAATATGGAGAAAGCTGTAAGACAGTCC
    TATCACTGGAATGTTGAGTATAATAGATATGAGTTGGCTATAAATTATGAAAATATAGAA
    GCGATACTCCGCCTACGGAGAAAAATACAAGCTTTTAAGAGAGAAGTGGGAGATACCTTG
    TTTATTAGTCCTCGCTATCCTAATGAAGCTACATGGAGAGAGGAAGCCCTAAAAGAATTG
    CCAGACTATTTTGATACTATTTTTTTAGAAAACTTTGGCCATGAGCTTTATACTCAAGCA
    CCTAAAGAAATCGCTAGTCTAATGAATGAGTGGCTCGCTTATTTTCTATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    591

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPJ_0842 [new locus tag: SPJ_RS04210 ]
  • symbol: SPJ_0842
  • description: hypothetical protein
  • length: 196
  • theoretical pI: 4.5472
  • theoretical MW: 23231.1
  • GRAVY: -0.483673

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Menaquinone and ubiquinone 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (TIGR03695; EC 4.2.99.20; HMM-score: 18.6)
  • TheSEED  :
    • FIG01114816: hypothetical protein
  • PFAM:
    AB_hydrolase (CL0028) Abhydrolase_1; alpha/beta hydrolase fold (PF00561; HMM-score: 20.9)
    BAAT_C; BAAT / Acyl-CoA thioester hydrolase C terminal (PF08840; HMM-score: 19.8)
    PGAP1; PGAP1-like protein (PF07819; HMM-score: 16.9)
    and 9 more
    Palm_thioest; Palmitoyl protein thioesterase (PF02089; HMM-score: 14.8)
    Vps51 (CL0295) Vps53_N; Vps53-like, N-terminal (PF04100; HMM-score: 14.7)
    AB_hydrolase (CL0028) LCAT; Lecithin:cholesterol acyltransferase (PF02450; HMM-score: 14.3)
    Hydrolase_4; Serine aminopeptidase, S33 (PF12146; HMM-score: 13.8)
    no clan defined NdhM; Cyanobacterial and plastid NDH-1 subunit M (PF10664; HMM-score: 13.6)
    AB_hydrolase (CL0028) Mbeg1-like; Mbeg1-like (PF11187; HMM-score: 13.2)
    Abhydrolase_5; Alpha/beta hydrolase family (PF12695; HMM-score: 13.1)
    Lipase_3; Lipase (class 3) (PF01764; HMM-score: 13)
    Abhydrolase_3; alpha/beta hydrolase fold (PF07859; HMM-score: 11.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9454
    • Cytoplasmic Membrane Score: 0.0248
    • Cell wall & surface Score: 0.001
    • Extracellular Score: 0.0287
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002631
    • TAT(Tat/SPI): 0.000473
    • LIPO(Sec/SPII): 0.00047
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKSWFKNEIVEEESICLIGHSIGGDLARYFASEFEEVKKLILLDGGYLDLDKILPLDTELEETKNYIKSQIISDLDVLTSKEKSEAKHWSENMEKAVRQSYHWNVEYNRYELAINYENIEAILRLRRKIQAFKREVGDTLFISPRYPNEATWREEALKELPDYFDTIFLENFGHELYTQAPKEIASLMNEWLAYFL

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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