Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 20-APR-2021
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae JJA
- locus tag: SPJ_RS03810 [old locus tag: SPJ_0765 ]
- pan locus tag?: PNEUPAN001795000
- symbol: SPJ_RS03810
- pan gene symbol?: nnrD
- synonym:
- product: NAD(P)H-hydrate dehydratase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPJ_RS03810 [old locus tag: SPJ_0765 ]
- symbol: SPJ_RS03810
- product: NAD(P)H-hydrate dehydratase
- replicon: chromosome
- strand: +
- coordinates: 734720..735559
- length: 840
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_012466 (734720..735559) NCBI
- BioCyc: SPJ_RS03810 BioCyc
- MicrobesOnline: see SPJ_0765
- PneumoBrowse for strain D39V: SPV_0722 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541
601
661
721
781ATGAAAGTGATTGATCAAGCCTTACTAGAAAAAGTTATTATTGAACGTTCTCGTACTAGT
CATAAAGGAGACTATGGCCGTCTGCTGTTTCTTGGTGGAACTTATCCTTATGGTGGTGCC
ATCATCATGGCTGCTTTGGCAGCTGTAAAAAGCGGTGCAGGATTGGTGACCGTTGGAACA
GATAGGGAAAATATTCCAGCCCTGCACAGCCATTTACCTGAGGCTATGGCCTTTTCTCTT
CAAGACCAGCAGTTGTTAAAAGAGCAATTGGAGAAGGCAGAAGTTGTCTTGCTGGGGCCG
GGTTTACGAGACGATGCTTTTGGAGAAGATCTAGTTAAACAGGTCTTTGCTGGCTTAAGA
CAAAATCAGATTTTGATTGTAGACGGAGGTGCCTTGACCATTCTTGCTAGGACAAGTTTG
TCATTTTCCTCAAGCCAGCTTATCCTAACTCCTCACCAAAAAGAATGGGAAAAATTATCT
GGAATTACGATTGAAAAGCAAAAGGAAGATGCAACGGCTAGTGCCCTAACTTCCTTCCCT
CAAGGAACAATTTTGGTGGAGAAAGGTTCAGCTACTCGTATTTGGCAAGCTGGCCAATCA
GATTATTACCAGTTACAGGTTGGCGGTCCCTATCAGGCGACTGGGGGAATGGGAGATACG
CTTGCTGGGATGATTGCAGGATTTGCAGGCCAGTTTAAGCAAGCTAGTCTTTACGAACGT
GTGGCAGTAGCGACCCATCTTCATTCAGCCATAGCCCAAGAACTAGCTCAAGAACAGTAT
GTGGTTTTGCCAACGGAGATTAGTAATTGTCTTCCTAAAGTAATGAAAAGATATGTCTAA60
120
180
240
300
360
420
480
540
600
660
720
780
840
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPJ_RS03810 [old locus tag: SPJ_0765 ]
- symbol: SPJ_RS03810
- description: NAD(P)H-hydrate dehydratase
- length: 279
- theoretical pI: 6.52028
- theoretical MW: 30143.4
- GRAVY: -0.00322581
⊟Function[edit | edit source]
- TIGRFAM: Unknown function General YjeF family C-terminal domain (TIGR00196; HMM-score: 171.3)and 1 moreBiosynthesis of cofactors, prosthetic groups, and carriers Thiamine hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase (TIGR00097; EC 2.7.1.49,2.7.4.7; HMM-score: 17.5)
- TheSEED: see SPJ_0765
- PFAM: Ribokinase (CL0118) Carb_kinase; Carbohydrate kinase (PF01256; HMM-score: 194.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helix: 1
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.08096
- TAT(Tat/SPI): 0.031854
- LIPO(Sec/SPII): 0.006174
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKVIDQALLEKVIIERSRTSHKGDYGRLLFLGGTYPYGGAIIMAALAAVKSGAGLVTVGTDRENIPALHSHLPEAMAFSLQDQQLLKEQLEKAEVVLLGPGLRDDAFGEDLVKQVFAGLRQNQILIVDGGALTILARTSLSFSSSQLILTPHQKEWEKLSGITIEKQKEDATASALTSFPQGTILVEKGSATRIWQAGQSDYYQLQVGGPYQATGGMGDTLAGMIAGFAGQFKQASLYERVAVATHLHSAIAQELAQEQYVVLPTEISNCLPKVMKRYV
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0722 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.