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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 11-FEB-2025
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae ATCC 700669
- locus tag: SPN23F_RS03535 [old locus tags: SPN23F06940 SPN23F_06940 ]
- pan locus tag?: PNEUPAN001712000
- symbol: SPN23F_RS03535
- pan gene symbol?: ppiA
- synonym:
- product: peptidylprolyl isomerase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPN23F_RS03535 [old locus tags: SPN23F06940 SPN23F_06940 ]
- symbol: SPN23F_RS03535
- product: peptidylprolyl isomerase
- replicon: chromosome
- strand: -
- coordinates: 681761..682564
- length: 804
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_011900 (681761..682564) NCBI
- BioCyc: SPN23F_RS03535 BioCyc
- MicrobesOnline: see SPN23F06940
- PneumoBrowse for strain D39V: SPV_0672 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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781ATGAAAAAACTAGCAACCCTTCTTTTACTGTCTACTGTAGCCCTAGCTGGGTGTAGCAGC
GTCCAACGCAGTCTGCGTGGTGATGATTATGTTGATTCCAGTCTTGCTGCTGAAGAAAGT
TCCAAAGTAGCTGCCCAATCTGCCAAGGAGTTAAACGATGCTTTAACAAACGAAAACGCC
AATTTCCCACAACTATCTAAGGAAGTTGCTGAAGATGAAGCCGAAGTGATTCTCCACACA
AGCCAAGGTGATATTCGCATTAAACTCTTCCCTAAACTCGCTCCTCTAGCGGTTGAAAAT
TTCCTCACTCACGCCAAAGAAGGCTACTATAACGGTATTACCTTCCACCGTGTCATCGAT
GGCTTTATGGTCCAAACTGGAGATCCAAAAGGGGACGGTACAGGTGGTCAGTCCATATGG
CATGACAAGGATAAGACTAAAGACAAAGGAACTGGTTTCAAGAACGAGATTACTCCTTAT
TTGTATAACATCCGTGGTGCTCTTGCTATGGCTAATACTGGTCAACCAAACACCAATGGC
AGCCAGTTCTTCATCAACCAAAACTCTACAGATACCTCTTCTAAACTCCCTACAAGCAAG
TATCCACAGAAAATTATCGAAGCCTACAAAGAAGGTGGAAACCCTAGTCTAGATGGCAAA
CACCCAGTCTTTGGTCAAGTGATTGACGGTATGGATGTTGTGGATAAGATTGCTAAAGCC
GAAAAAGATGAAAAAGACAAGCCAACTACTGCTATCACAATCGACAGCATCGAAGTGGTG
AAAGACTACGATTTTAAATCTTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPN23F_RS03535 [old locus tags: SPN23F06940 SPN23F_06940 ]
- symbol: SPN23F_RS03535
- description: peptidylprolyl isomerase
- length: 267
- theoretical pI: 5.20225
- theoretical MW: 29066.3
- GRAVY: -0.517978
⊟Function[edit | edit source]
- reaction: EC 5.2.1.8? ExPASyPeptidylprolyl isomerase Peptidylproline (omega=180) = peptidylproline (omega=0)
- TIGRFAM:
- TheSEED: see SPN23F06940
- PFAM: Cyclophil-like (CL0475) Pro_isomerase; Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD (PF00160; HMM-score: 180.8)and 1 moreLppaM (CL0421) LPAM_1; Prokaryotic membrane lipoprotein lipid attachment site (PF08139; HMM-score: 14.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.97
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.01
- Extracellular Score: 0.02
- Internal Helices: 0
- DeepLocPro: Extracellular
- Cytoplasmic Score: 0.0068
- Cytoplasmic Membrane Score: 0.0784
- Cell wall & surface Score: 0.0011
- Extracellular Score: 0.9137
- SignalP: Signal peptide LIPO(Sec/SPII) length 17 aa
- SP(Sec/SPI): 0.000871
- TAT(Tat/SPI): 0.000095
- LIPO(Sec/SPII): 0.998774
- Cleavage Site: CS pos: 17-18. LAG-CS. Pr: 0.9994
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000731918 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MKKLATLLLLSTVALAGCSSVQRSLRGDDYVDSSLAAEESSKVAAQSAKELNDALTNENANFPQLSKEVAEDEAEVILHTSQGDIRIKLFPKLAPLAVENFLTHAKEGYYNGITFHRVIDGFMVQTGDPKGDGTGGQSIWHDKDKTKDKGTGFKNEITPYLYNIRGALAMANTGQPNTNGSQFFINQNSTDTSSKLPTSKYPQKIIEAYKEGGNPSLDGKHPVFGQVIDGMDVVDKIAKAEKDEKDKPTTAITIDSIEVVKDYDFKS
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0672 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
⊟Relevant publications[edit | edit source]
Peter W M Hermans, Peter V Adrian, Christa Albert, Silvia Estevão, Theo Hoogenboezem, Ingrid H T Luijendijk, Thilo Kamphausen, Sven Hammerschmidt
The streptococcal lipoprotein rotamase A (SlrA) is a functional peptidyl-prolyl isomerase involved in pneumococcal colonization.
J Biol Chem: 2006, 281(2);968-76
[PubMed:16260779] [WorldCat.org] [DOI] (P p)