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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 27-FEB-2015

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae SPNA45
  • locus tag: SPNA45_00920 [new locus tag: SPNA45_RS05205 ]
  • pan locus tag?: PNEUPAN002516000
  • symbol: topA
  • pan gene symbol?: topA
  • synonym:
  • product: DNA topoisomerase I

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPNA45_00920 [new locus tag: SPNA45_RS05205 ]
  • symbol: topA
  • product: DNA topoisomerase I
  • replicon: chromosome
  • strand: +
  • coordinates: 904267..906198
  • length: 1932
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    ATGTCCGTCGATATTGAAAATAATTATGAACCGCAATATATTAATATCCGAGGAAAAGGC
    CCTCTTATCAATGACTTGAAAAAAGAAGCTAAAAAAGCTAATAAAGTTTTTCTCGCGAGT
    GACCCGGACCGTGAAGGAGAAGCGATTTCTTGGCATTTGGCCCATATTCTCAACTTGGAT
    GAAAATGATGCCAACCGTGTGGTCTTCAATGAAATCACCAAGGATGCAGTCAAAAATGCG
    TTTAAAGAACCTCGTAAGATCGATATGGACTTGGTCGATGCCCAACAAGCTCGTCGGATC
    TTGGACCGCTTGGTAGGGTATTCGATTTCGCCTATTTTGTGGAAGAAGGTCAAGAAGGGC
    TTGTCAGCAGGTCGCGTTCAGTCCATTGCCCTTAAACTCATCATTGACCGTGAAAATGAA
    ATCAATGCCTTCCAGCCAGAAGAATACTGGACAGTTGATGCTGTCTTTAAAAAGGGAACC
    AAACAATTTCATGCTTCCTTCTATGGAGTAGATGGTAAAAAGATGAAACTGACCAGCAAT
    GACGAAGTCAAGGAAGTCTTGTCTCGTCTGACGAGTAAAGACTTTTCAGTAGATCAGGTG
    GATAAGAAAGAGCGCAAGCGCAATGCTCCTTTACCCTATACCACTTCATCTATGCAGATG
    GATGCTGCCAATAAAATCAATTTCCGTACTCGAAAAACCATGATGGTTGCCCAACAGCTC
    TATGAAGGAATTAATATCGGTTCTGGTGTTCAAGGTTTGATTACCTATATGCGTACCGAT
    TCGACTCGTATCAGTCCTGTAGCGCAAAATGAGGCGGCAAGCTTCATTACGGATCGTTTT
    GGTAGTAAGTATTCTAAGCACGGTAGCAAGGTCAAAAACGCATCAGGTGCTCAGGATGCC
    CATGAGGCTATTCGTCCGTCAAGTGTCTTTAATACACCAGAAAGCATCGCTAAGTATCTG
    GACAAGGATCAGCTCAAGCTATATACCCTTATCTGGAATCGTTTTGTGGCTAGCCAGATG
    ACAGCGGCCGTTTTTGATACCATGGCTGTTAAATTGTCTCAAAAAGGGGTTCAATTTGCT
    GCCAATGGTAGTCAGGTTAAGTTTGATGGTTATCTTGCCATTTATAATGATTCTGACAAG
    AATAAGATGTTACCGGACATGGTTGTTGGAGATGTGGTCAAACAGGTCAATAGCAAACCA
    GATCAACATTTCACCCAACCGCCTGCCCGTTATTCTGAAGCAACACTGATTAAAACCTTA
    GAGGAAAATGGGGTTGGACGTCCATCAACCTACGCGCCAACCATTGAAACCATTCAGAAA
    CGTTATTATGTTCGCCTGGCAGCCAAACGTTTTGAACCGACAGAGTTGGGAGAAATTGTC
    AATAAGCTCATCGTTGAATATTTCCCAGATATCGTAAACGTGACCTTCACAGCTGAAATG
    GAAGGTAAACTGGATGATGTCGAAGTTGGAAAAGAGCAGTGGCGACGGGTCATTGATGCC
    TTTTACAAACCATTCTCTAAAGAAGTTGCCAAGGCTGAAGAAGAAATGGAAAAAATCCAG
    ATTAAGGATGAACCAGCTGGATTTGACTGTGAAGTGTGTGGCAGTCCAATGGTCATTAAA
    CTTGGTCGTTTTGGTAAATTCTACGCTTGTAGCAATTTCCCAGATTGCCGTCATACCCAA
    GCAATCGTGAAAGAGATTGGTGTTGAGTGTCCAAGCTGTCATCAGGGACAAATTATTGAG
    CGAAAAACCAAGCGTAATCGCCTCTTCTATGGTTGCAATCGCTATCCAGAATGTGAATTT
    ACCTCTTGGGACAAGCCTGTTGGTCGTGACTGTCCAAAATGTGGCAACTTCCTCATGGAG
    AAAAAAGTCCGTGGTGGTGGCAAGCAGGTTGTTTGTAGCAAAGGCGACTACGAGGAAGAA
    AAGATTAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1932

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPNA45_00920 [new locus tag: SPNA45_RS05205 ]
  • symbol: TopA
  • description: DNA topoisomerase I
  • length: 643
  • theoretical pI: 9.01972
  • theoretical MW: 72927.9
  • GRAVY: -0.556299

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DNA topoisomerase I (TIGR01051; EC 5.99.1.2; HMM-score: 740.7)
    and 5 more
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DNA topoisomerase I (TIGR01057; EC 5.99.1.2; HMM-score: 292.8)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair reverse gyrase (TIGR01054; EC 3.6.4.12,5.99.1.3; HMM-score: 290.7)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DNA topoisomerase III (TIGR01056; EC 5.99.1.2; HMM-score: 203.8)
    Metabolism Energy metabolism Methanogenesis methyl coenzyme M reductase system, component A2 (TIGR03269; HMM-score: 10.4)
    Genetic information processing Transcription Transcription factors transcription factor S (TIGR01384; HMM-score: 6.3)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    no clan defined Topoisom_bac; DNA topoisomerase (PF01131; HMM-score: 429.5)
    and 8 more
    Zn_Beta_Ribbon (CL0167) zf-C4_Topoisom; Topoisomerase DNA binding C4 zinc finger (PF01396; HMM-score: 102.3)
    Toprim-like (CL0413) Toprim; Toprim domain (PF01751; HMM-score: 59.2)
    Zn_Beta_Ribbon (CL0167) RNA_POL_M_15KD; RNA polymerases M/15 Kd subunit (PF02150; HMM-score: 19.9)
    no clan defined DUF2996; Protein of unknown function (DUF2996) (PF11210; HMM-score: 15.8)
    Zn_Beta_Ribbon (CL0167) Auto_anti-p27; Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) (PF06677; HMM-score: 14.6)
    no clan defined HypA; Hydrogenase/urease nickel incorporation, metallochaperone, hypA (PF01155; HMM-score: 11.3)
    Zn_Beta_Ribbon (CL0167) Zn-ribbon_8; Zinc ribbon domain (PF09723; HMM-score: 10.2)
    no clan defined Cys_rich_CPXG; Cysteine-rich CPXCG (PF14255; HMM-score: 10.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.867
    • Cytoplasmic Membrane Score: 0.002
    • Cell wall & surface Score: 0.0011
    • Extracellular Score: 0.1299
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003628
    • TAT(Tat/SPI): 0.000297
    • LIPO(Sec/SPII): 0.000521
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: CCM08206 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MSVDIENNYEPQYINIRGKGPLINDLKKEAKKANKVFLASDPDREGEAISWHLAHILNLDENDANRVVFNEITKDAVKNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDRENEINAFQPEEYWTVDAVFKKGTKQFHASFYGVDGKKMKLTSNDEVKEVLSRLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGSGVQGLITYMRTDSTRISPVAQNEAASFITDRFGSKYSKHGSKVKNASGAQDAHEAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKLSQKGVQFAANGSQVKFDGYLAIYNDSDKNKMLPDMVVGDVVKQVNSKPDQHFTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKLIVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSKEVAKAEEEMEKIQIKDEPAGFDCEVCGSPMVIKLGRFGKFYACSNFPDCRHTQAIVKEIGVECPSCHQGQIIERKTKRNRLFYGCNRYPECEFTSWDKPVGRDCPKCGNFLMEKKVRGGGKQVVCSKGDYEEEKIK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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