From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae P1031
  • locus tag: SPP_1671 [new locus tag: SPP_RS08220 ]
  • pan locus tag?: PNEUPAN003067000
  • symbol: SPP_1671
  • pan gene symbol?: —
  • synonym:
  • product: efflux ABC transporter, permease protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPP_1671 [new locus tag: SPP_RS08220 ]
  • symbol: SPP_1671
  • product: efflux ABC transporter, permease protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1543490..1546198
  • length: 2709
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    2701
    ATGATCAAGCGAAAAACTTATTGGAAGGACTTAATTCAGTCCTTCACAGACTCCAAGGGG
    CGTTTTTTATCCATCTTGATCCTGATGATGTTGGGATCTCTAGCCTTAGTAGGCCTCAAA
    GTAACCAGTCCCAACATGGAGGCGACAGCTAATGCTTATTTAACAACTGCTCAAACCTTG
    GATTTGGCAGTCATGTCTAACTATGGCTTGGATCAAGCAGACCAAGAAGAACTAAAACAG
    ACGGAGGGCGCAGAGGTCGAGTTTGGCTATTTGACAGATGTGACTATGGATAATGGGCAG
    GATGCCATTCGGCTGTACTCCAAACCAGAGCGAATTTCAACCTTTCAGCTAAGAAAGGGA
    CGACTTCCTCAGTCAGACAGGGAAATCGCTTTGGCCACTCATTTGCAAGGCCAATACAGC
    GTGGGACAGGAGATTAGTTTTAAAGAAAAAGAAGAGGGTCATTCCTCTTTAAAAGACCAT
    ACTTATACCATTACTGGTTTTGTGGATTCGGCTGAAATCCTCTCCCAGCGAGATATGGGC
    TACGCAGGAAGTGGAAGTGGGACTCTGACAGCCTATGGGGTGATTTTACCTAGTCAATTT
    GATCAGAAAGTCTACAATATAGCTCGTTTGAAATATCAAGATTTAGCAGGTTTAAATGCC
    TTTTCATCAGCTTATGAAGAAAAATCCAAGCAACATCAGGAAGACCTTGAACAAACTTTA
    TCAGATAATGGCAAGGTACGTCTGCAACTTTTGAAAAAAGAAGGACAAGAGTCTCTAGAC
    AAGGGGCAAGAGACTCTTGACAAGGCTCAGACTAATTTGCAGGAAGGCAAGCGTCGTTTA
    GCAGCTGCTCAAGCTCGTATACAGGCTCAAGAAAGTCAACTAGCCTTGTTTCCTCAAGCT
    CAGAGAGAGCAGGCTAGTGCTCAACTTACCCAAGCCAAGCAGGAACTGGGCAAGGAAGAG
    GACAAACTAAAGCAAGCTGAACAAAATCTAGCCCAAGAAAAGGAAAAATTAGAAAAACAT
    CAGCAAGTCTTGGATGATTTGGCGGAGCCAAGGTATCAGGTTTATAATCGTCAGACCATG
    CCAGGTGGTCAGGGCTATCTTATGTATAGCAATGCTTCATCCAGTATTCGAGCAGTGGGC
    AATATCTTTCCTGTGGTACTTTATGCCGTAGCAGCCATGGTGACCTTTACGACCATGACT
    CGCTTTGTAGACGAAGAGCGAACTCATGCAGGGATTTTTAAGGCCTTGGGTTATCGTAGT
    AAGGATATTATCGCCAAGTTTCTCCTTTATGGACTAGTAGCTGGGACTGTCGGAACGGCT
    CTAGGTAGTATACTTGGTCATTATTTGCTAGCCAGTGTAATTTCAAGTGTCATTACAAAA
    GGCATGGTGGTGGGAGAAACCCAGATTCAGTTCTATTGGACCTATAGCTTACTAGCTCTT
    GTCTTGAGCTGGTTGGCGAGTGTGTTACCAGCCTATCTGGTGGCTTGGAGGGAACTTCAT
    GACGAAGCAGCCCAGCTTCTACTTCCTAAACCTCCTGTCAAAGGAGCTAAAATCTTATTG
    GAGCGTATCGGTTTTATCTGGCGTCGTCTCAGTTTTACTCATAAGGTAACAGCCCGCAAC
    ATCTTTCGTTATAAGCAGAGAATGTTGATGACAATCTTTGGTGTGGCAGGTTCTGTAGCT
    CTGCTCTTTGCAGGTTTGGGAATCCAATCTTCTGTAGCAGGAGTTCCGTCTAAACAGTTT
    CAACAAATCCAACAGTATCAGATGCTTGTCTCTGAAAATCCTAGTGCGACCAATCAGGAC
    AAGGTAGAGCTAGCAGAAGTGTTGAAAGGGCAGGAGATACTAGCCTACCAGAAAATCTAT
    TCTAAAACGCTAGACAAGGATTTCAAGGGCAGGGCTGGTCTTCAAAACATTACTCTTATG
    ATGATAGAGAAGGAAGATTTGACTCCCTTTATCCATCTTCAACATCATCAGCAGGAGCTG
    ACATTAAAAGATGGCATCGTTATTACAGCTAAACTCGCCCAGCTGGCAGGTGTCAAGGTT
    GGGCAGACTTTAGAAATTGAAGGTAAGGAACTAAAGGTCGCTGCTATTACTGAGAACTAC
    GTTGGTCACTTTATTTATATGAGTCAGGCTAGCTATGAGCAACTTTACGGACAGCTACCC
    CAAGCCAACACTTATCTGGTCTCATTAAGGGATACCAGTGCAACTAGTATCGAAAGTCAG
    GCGGGCTTGCTTATGAATCAATCTGCGGTGTCCAGTGTTGTCCAAAATGCTTCAGCCATT
    CGACTCTTCGACTCTATCGCTAGCTCACTCAATCAGACCATGACCATCTTGGTCATCGTA
    TCGGTTCTATTAGCTATTGTCATCCTTTACAATCTGACCAATATCAACGTAGCTGAGAGA
    ATCCGTGAACTCTCCACTATCAAGGTTCTCGGTTTTCATAATAATGAAGTCACCCTCTAC
    ATTTACCGTGAGACGATTGTGCTGTCCCTTGTGGGAATCGTACTTGGTCTGGTAGCTGGT
    TTCTATTTACACCAATTTTTGATTCAAATGATTTCGCCTGCGACTATTCTCTTTTATCCG
    CAGGTAGGCTGGGAAGTCTATGTAATCCCAGTGGCAGCAGTAAGCATCATTTTGACCTTG
    CTTGGTTTCTTCGTCAATTATTATCTGAGAAAGGTTGACATGTTAGAAGCCCTGAAATCT
    GTAGAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2340
    2400
    2460
    2520
    2580
    2640
    2700
    2709

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPP_1671 [new locus tag: SPP_RS08220 ]
  • symbol: SPP_1671
  • description: efflux ABC transporter, permease protein
  • length: 902
  • theoretical pI: 7.29395
  • theoretical MW: 100513
  • GRAVY: -0.0273836

⊟Function[edit | edit source]

  • TIGRFAM:
    acidobacterial duplicated orphan permease (TIGR03434; HMM-score: 38.3)
    and 7 more
    Genetic information processing Protein fate Protein and peptide secretion and trafficking lipoprotein releasing system, transmembrane protein, LolC/E family (TIGR02212; HMM-score: 22.8)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking lipoprotein releasing system, transmembrane protein LolE (TIGR02213; HMM-score: 22.8)
    SEC10/PgrA surface exclusion domain (TIGR04320; HMM-score: 17.2)
    Cellular processes Cellular processes Cell division chromosome segregation protein SMC (TIGR02169; HMM-score: 9.9)
    Genetic information processing DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02169; HMM-score: 9.9)
    Metabolism Transport and binding proteins Other ABC exporter transmembrane subunit, DevC protein (TIGR01185; HMM-score: 9.4)
    mobilome CxxCx(11)CxxC protein (TIGR04402; HMM-score: 7.3)
  • TheSEED  :
    • ABC transporter permease protein
  • PFAM:
    BPD_transp_1 (CL0404) FtsX; FtsX-like permease family (PF02687; HMM-score: 107.6)
    and 7 more
    Vir (CL0411) Plasmodium_Vir; Plasmodium vivax Vir protein (PF05795; HMM-score: 17.5)
    no clan defined RsgI_N; Anti-sigma factor N-terminus (PF12791; HMM-score: 16.6)
    LAT2; Linker for activation of T-cells family member 2 (PF15703; HMM-score: 12.8)
    Flagellin_C; Bacterial flagellin C-terminal helical region (PF00700; HMM-score: 11.7)
    ODV-E18; Occlusion-derived virus envelope protein ODV-E18 (PF10717; HMM-score: 10.4)
    Exonuc_VII_L; Exonuclease VII, large subunit (PF02601; HMM-score: 8.9)
    T3SS-Chaperone (CL0419) HrpB7; Bacterial type III secretion protein (HrpB7) (PF09486; HMM-score: 7.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 8
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9997
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0002
  • SignalP: Signal peptide SP(Sec/SPI) length 50 aa
    • SP(Sec/SPI): 0.495858
    • TAT(Tat/SPI): 0.025767
    • LIPO(Sec/SPII): 0.048446
    • Cleavage Site: CS pos: 50-51. ATA-NA. Pr: 0.1365
  • predicted transmembrane helices (TMHMM): 8

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ACO20434 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MIKRKTYWKDLIQSFTDSKGRFLSILILMMLGSLALVGLKVTSPNMEATANAYLTTAQTLDLAVMSNYGLDQADQEELKQTEGAEVEFGYLTDVTMDNGQDAIRLYSKPERISTFQLRKGRLPQSDREIALATHLQGQYSVGQEISFKEKEEGHSSLKDHTYTITGFVDSAEILSQRDMGYAGSGSGTLTAYGVILPSQFDQKVYNIARLKYQDLAGLNAFSSAYEEKSKQHQEDLEQTLSDNGKVRLQLLKKEGQESLDKGQETLDKAQTNLQEGKRRLAAAQARIQAQESQLALFPQAQREQASAQLTQAKQELGKEEDKLKQAEQNLAQEKEKLEKHQQVLDDLAEPRYQVYNRQTMPGGQGYLMYSNASSSIRAVGNIFPVVLYAVAAMVTFTTMTRFVDEERTHAGIFKALGYRSKDIIAKFLLYGLVAGTVGTALGSILGHYLLASVISSVITKGMVVGETQIQFYWTYSLLALVLSWLASVLPAYLVAWRELHDEAAQLLLPKPPVKGAKILLERIGFIWRRLSFTHKVTARNIFRYKQRMLMTIFGVAGSVALLFAGLGIQSSVAGVPSKQFQQIQQYQMLVSENPSATNQDKVELAEVLKGQEILAYQKIYSKTLDKDFKGRAGLQNITLMMIEKEDLTPFIHLQHHQQELTLKDGIVITAKLAQLAGVKVGQTLEIEGKELKVAAITENYVGHFIYMSQASYEQLYGQLPQANTYLVSLRDTSATSIESQAGLLMNQSAVSSVVQNASAIRLFDSIASSLNQTMTILVIVSVLLAIVILYNLTNINVAERIRELSTIKVLGFHNNEVTLYIYRETIVLSLVGIVLGLVAGFYLHQFLIQMISPATILFYPQVGWEVYVIPVAAVSIILTLLGFFVNYYLRKVDMLEALKSVE

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPP_1671&oldid=125959"