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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 26-OCT-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae R6
  • locus tag: SPR_RS10760 [old locus tag: spr1033 ]
  • pan locus tag?: PNEUPAN002273000
  • symbol: SPR_RS10760
  • pan gene symbol?: serB
  • synonym:
  • product: HAD hydrolase family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPR_RS10760 [old locus tag: spr1033 ]
  • symbol: SPR_RS10760
  • product: HAD hydrolase family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1016262..1016591
  • length: 330
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_003098 (1016262..1016591) NCBI
  • BioCyc: see spr1033
  • MicrobesOnline: see spr1033
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    TTGGAGAGATTAGCAAAATCCCTTGGTATTGCCTATTTCACTGCCAACCAGCTTGAAGTC
    AAAGAAGGTCTTTTAACAGGAAAATTAGTTGGACAAATTATAAGTCCCCAGGTCAAAAAA
    AAGACTCTGGAAAAATGGAGAAAGAAACTAAAACTTTCTAAAGAAAGAAGGGTGGCAATC
    GGTGATGGGGTTAATAATCTATTAATGTTGAAGTCGGCGGAGTTAGGAATCGCCTTTTGT
    GCCAAAGAAGTGCTCAAAAAAGAAATACCACATCATGTTGACAAGAGGGATTTTTTAGAA
    GTTCTTCCTTTGATTGACTGTTTAGAATGA
    60
    120
    180
    240
    300
    330

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPR_RS10760 [old locus tag: spr1033 ]
  • symbol: SPR_RS10760
  • description: HAD hydrolase family protein
  • length: 109
  • theoretical pI: 10.2394
  • theoretical MW: 12323.7
  • GRAVY: -0.120183

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Amino acid biosynthesis Serine family phosphoserine phosphatase SerB (TIGR00338; EC 3.1.3.3; HMM-score: 95.3)
    and 14 more
    Unknown function Enzymes of unknown specificity HAD phosphoserine phosphatase-like hydrolase, family IB (TIGR01488; HMM-score: 32.5)
    Unknown function Enzymes of unknown specificity Cof-like hydrolase (TIGR00099; HMM-score: 32.3)
    phosphoserine phosphatase-like hydrolase, archaeal (TIGR01491; HMM-score: 30.2)
    Unknown function Enzymes of unknown specificity HAD hydrolase, family IB (TIGR01490; HMM-score: 26.6)
    HAD ATPase, P-type, family IC (TIGR01494; EC 3.6.3.-; HMM-score: 25.7)
    phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein (TIGR02137; EC 3.1.3.3; HMM-score: 20.7)
    phosphoglycolate phosphatase, TA0175-type (TIGR01487; EC 3.1.3.18; HMM-score: 17.8)
    heavy metal translocating P-type ATPase (TIGR01525; EC 3.6.3.-; HMM-score: 16.9)
    Metabolism Transport and binding proteins Cations and iron carrying compounds cadmium-translocating P-type ATPase (TIGR01512; EC 3.6.3.3; HMM-score: 14.6)
    Cellular processes Cellular processes Detoxification copper-translocating P-type ATPase (TIGR01511; EC 3.6.3.4; HMM-score: 12.5)
    Metabolism Transport and binding proteins Cations and iron carrying compounds copper-translocating P-type ATPase (TIGR01511; EC 3.6.3.4; HMM-score: 12.5)
    potassium/sodium efflux P-type ATPase, fungal-type (TIGR01523; EC 3.6.3.-; HMM-score: 11.3)
    phospholipid-translocating P-type ATPase, flippase (TIGR01652; EC 3.6.3.1; HMM-score: 10.9)
    P-type ATPase of unknown pump specificity (type V) (TIGR01657; HMM-score: 9.7)
  • TheSEED: see spr1033
  • PFAM:
    HAD (CL0137) Hydrolase_3; haloacid dehalogenase-like hydrolase (PF08282; HMM-score: 27.4)
    Hydrolase; haloacid dehalogenase-like hydrolase (PF00702; HMM-score: 23.4)
    and 1 more
    HAD; haloacid dehalogenase-like hydrolase (PF12710; HMM-score: 21.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.01109
    • TAT(Tat/SPI): 0.000889
    • LIPO(Sec/SPII): 0.00171
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MERLAKSLGIAYFTANQLEVKEGLLTGKLVGQIISPQVKKKTLEKWRKKLKLSKERRVAIGDGVNNLLMLKSAELGIAFCAKEVLKKEIPHHVDKRDFLEVLPLIDCLE

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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