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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 31-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae Taiwan19F-14
- locus tag: SPT_0230 [new locus tag: SPT_RS01165 ]
- pan locus tag?: PNEUPAN000228000
- symbol: SPT_0230
- pan gene symbol?: —
- synonym:
- product: phage protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPT_0230 [new locus tag: SPT_RS01165 ]
- symbol: SPT_0230
- product: phage protein
- replicon: chromosome
- strand: +
- coordinates: 203995..204336
- length: 342
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP000921 (203995..204336) NCBI
- BioCyc: see SPT_RS01165
- MicrobesOnline: 7473984 MicrobesOnline
- PneumoBrowse for strain D39V:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301ATGAGTCTATCAGAGAATGACAAACGAGTATTAAGACTAATCAAGGTAGGGGCTGAGAAC
TCCATAACAGGGGCAGAAATCAGCCTTATAACTAAGCTGGCGGAAAGAACCGTACAAGAT
ATTATCAGCCGTCTAATCACGCGTCATAGTGTTCCTATTGTTGGGGTTCGCCATGGGACA
TTTAGAGGATATTTTATCCCAGCTAACAAAGAGGAGCTACTGGACGGAGCAAAGGCATTC
TATAACCAAGTACAGGAAGAACAGAAACGCCTAACTGTCCTTTTGAATGCTGATTTAGAG
AGTTACAAAGAAACCTTGAAGGAGGTGGGCGGATATGTTTAG60
120
180
240
300
342
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPT_0230 [new locus tag: SPT_RS01165 ]
- symbol: SPT_0230
- description: phage protein
- length: 113
- theoretical pI: 8.90244
- theoretical MW: 12702.5
- GRAVY: -0.220354
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED :
- FIG01114419: hypothetical protein
- PFAM: HTH (CL0123) HTH_24; Winged helix-turn-helix DNA-binding (PF13412; HMM-score: 15.1)Rio2_N; Rio2, N-terminal (PF09202; HMM-score: 14.3)HTH_23; Homeodomain-like domain (PF13384; HMM-score: 14)GerE; Bacterial regulatory proteins, luxR family (PF00196; HMM-score: 12.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9271
- Cytoplasmic Membrane Score: 0.0058
- Cell wall & surface Score: 0.0015
- Extracellular Score: 0.0656
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.002307
- TAT(Tat/SPI): 0.000323
- LIPO(Sec/SPII): 0.000353
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: ACO23406 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MSLSENDKRVLRLIKVGAENSITGAEISLITKLAERTVQDIISRLITRHSVPIVGVRHGTFRGYFIPANKEELLDGAKAFYNQVQEEQKRLTVLLNADLESYKETLKEVGGYV
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator: RegR* (repression) regulon
RegR* (TF) important in Hyaluronate utilization; RegPrecise transcription unit transferred from TIGR4 data RegPrecise
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V:
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.