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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 31-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae Taiwan19F-14
- locus tag: SPT_0239 [new locus tag: SPT_RS01205 ]
- pan locus tag?: PNEUPAN000918000
- symbol: SPT_0239
- pan gene symbol?: ypdF
- synonym:
- product: Xaa-Pro dipeptidase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPT_0239 [new locus tag: SPT_RS01205 ]
- symbol: SPT_0239
- product: Xaa-Pro dipeptidase
- replicon: chromosome
- strand: +
- coordinates: 213775..214836
- length: 1062
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP000921 (213775..214836) NCBI
- BioCyc: see SPT_RS01205
- MicrobesOnline: 7473993 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_0177 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1021ATGAATAAACGCGTACAAGCATTTCTAGCTAAAATGCAAGAAAAAGAACTAGATGGTATC
ATCATCAACAATCTTAAAAACGTCTATTATTTGACTGGTTTTTGGGGCTCAAACGGAACA
GTCTTTATCAGCCGTGACCGTCAGGTCTTAGTGACAGACTCTCGCTATATCATCGCAGCT
AAGCAAGAAACCAGTGGTTTTGAGATTGTGGCTGATCGTGATGAATTGGCTGTCATTGCA
GGAATTGTTAAGGACATGGGCTTGACTCGTATCGGTTTTGAAGATGAGATTTCAGTGTCT
TATTACCACCGTATGCAGGCAGCTTTTGCAGGTTTGGACTTGCTTCCACAAACTCAGTTT
GTGGAAGGTCTTCGTATGATTAAGGATGAGGCAGAGATTGCAGCGATTCGCAAGGCTTGT
TCTATCTCAGACCAAGCTTTCCGCGATGCGCTTGACTTTATCAAACCAGGAAAAACTGAA
ATTGAGATTGCCAACTTCCTTGATTTCCGCATGCGTGAGTTGGGAGCATCTGGCTTATCT
TTTGATACGATCCTAGCTAGCGGTATCAATTCTTCTAAACCCCATGCCCATCCAATGCAC
AAACCAGTGGAGTTGGGAGAAGCCATTACCATGGACTTCGGCTGTCTCTATGACCACTAT
GTCAGTGATATGACCCGGACTATCTATCTAGGGCATGTTAGCGATGAGCAGGCAGAGATT
TACAATACGGTTCTAAAAGCTAACCAAGCCTTGATTGACCAAGCTAAGGCAGGCTTAGGT
TTCCGTGACTTTGACAAAATCCCTCGTGATATTATCATTGAGGCAGGTTATGGTGACTAC
TTTACTCACGGCATTGGCCACGGTATTGGTCTGGATATCCATGAGGAACCCTACTTTAGC
CAGACTTCTACAGAAACTATTAAGACAGGTATGGCCTTGACCGATGAACCAGGTATCTAT
ATCGAAGGCAAATATGGCGTTCGTATCGAGGATGATATCCTGATTACAGAGACAGGTTGT
GAATTATTGACCCTAGCTCCAAAAGAGTTGATAGTCATTTAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPT_0239 [new locus tag: SPT_RS01205 ]
- symbol: SPT_0239
- description: Xaa-Pro dipeptidase
- length: 353
- theoretical pI: 4.59783
- theoretical MW: 39341.6
- GRAVY: -0.0796034
⊟Function[edit | edit source]
- TIGRFAM: ectoine utilization protein EutD (TIGR02993; EC 3.-.-.-; HMM-score: 76)Protein fate Protein modification and repair methionine aminopeptidase, type I (TIGR00500; EC 3.4.11.18; HMM-score: 72.4)and 1 moreProtein fate Protein modification and repair methionine aminopeptidase, type II (TIGR00501; EC 3.4.11.18; HMM-score: 34.5)
- TheSEED :
- Aminopeptidase YpdF (MP-, MA-, MS-, AP-, NP- specific)
- PFAM: no clan defined Peptidase_M24; Metallopeptidase family M24 (PF00557; HMM-score: 210.1)and 1 moreAMP_N-like (CL0356) Creatinase_N; Creatinase/Prolidase N-terminal domain (PF01321; HMM-score: 88.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.97
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.01
- Extracellular Score: 0.02
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9976
- Cytoplasmic Membrane Score: 0.0003
- Cell wall & surface Score: 0.0001
- Extracellular Score: 0.002
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.00419
- TAT(Tat/SPI): 0.000284
- LIPO(Sec/SPII): 0.00042
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: ACO24248 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MNKRVQAFLAKMQEKELDGIIINNLKNVYYLTGFWGSNGTVFISRDRQVLVTDSRYIIAAKQETSGFEIVADRDELAVIAGIVKDMGLTRIGFEDEISVSYYHRMQAAFAGLDLLPQTQFVEGLRMIKDEAEIAAIRKACSISDQAFRDALDFIKPGKTEIEIANFLDFRMRELGASGLSFDTILASGINSSKPHAHPMHKPVELGEAITMDFGCLYDHYVSDMTRTIYLGHVSDEQAEIYNTVLKANQALIDQAKAGLGFRDFDKIPRDIIIEAGYGDYFTHGIGHGIGLDIHEEPYFSQTSTETIKTGMALTDEPGIYIEGKYGVRIEDDILITETGCELLTLAPKELIVI
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator: RegR* (repression) regulon
RegR* (TF) important in Hyaluronate utilization; RegPrecise transcription unit transferred from TIGR4 data RegPrecise
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0177 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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