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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 31-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae TIGR4
- locus tag: SP_1618 [new locus tag: SP_RS07980 ]
- pan locus tag?: PNEUPAN003009000
- symbol: SP_1618
- pan gene symbol?: manP
- synonym:
- product: PTS system, IIB component
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SP_1618 [new locus tag: SP_RS07980 ]
- symbol: SP_1618
- product: PTS system, IIB component
- replicon: chromosome
- strand: -
- coordinates: 1519410..1519736
- length: 327
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: AE005672 (1519410..1519736) NCBI
- BioCyc: see SP_RS07980
- MicrobesOnline: 117058 MicrobesOnline
- PneumoBrowse for strain D39V:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301TTGGAGGGTATCCGTATGAAAATTGTTGGTGTTGCAGCTTGTACTGTGGGAATTGCCCAC
ACTTATATTGCACAGGAAAAATTAGAGAATGCCGCAAAGGTAGCTGGACATGTGATTCAT
GTTGAGACTCAGGGGACAATAGGGGTAGAAAATGAATTGAGTCAAGAGCAGATTGATGCA
GCGGATGTAGTTATTTTAGCAGTTGATGTTAAGATTTCTGGTATGGAACGCTTTGAGGGT
AAAAAGATTATCAAGGTTCCAACAGAAGTGGCAGTCAAATCTCCCAATAAACTGATTGCT
AAAGCTGTTGAGATTGTTACGAAATAA60
120
180
240
300
327
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SP_1618 [new locus tag: SP_RS07980 ]
- symbol: SP_1618
- description: PTS system, IIB component
- length: 108
- theoretical pI: 6.79472
- theoretical MW: 11531.5
- GRAVY: 0.240741
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Carbohydrates, organic alcohols, and acids PTS system, Fru family, IIB component (TIGR00829; EC 2.7.1.69; HMM-score: 101.8)Signal transduction PTS PTS system, Fru family, IIB component (TIGR00829; EC 2.7.1.69; HMM-score: 101.8)
- TheSEED :
- PTS system, fructose-specific IIB component (EC 2.7.1.69)
- PFAM: Phosphatase (CL0031) PTS_IIB; PTS system, Lactose/Cellobiose specific IIB subunit (PF02302; HMM-score: 65.6)and 1 moreE-set (CL0159) aRib; Atypical Rib domain (PF18938; HMM-score: 15.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.97
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.01
- Extracellular Score: 0.02
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.465182
- TAT(Tat/SPI): 0.006203
- LIPO(Sec/SPII): 0.022311
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MEGIRMKIVGVAACTVGIAHTYIAQEKLENAAKVAGHVIHVETQGTIGVENELSQEQIDAADVVILAVDVKISGMERFEGKKIIKVPTEVAVKSPNKLIAKAVEIVTK
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator: CcpA regulon
CcpA (TF) important in Global catabolite repression; RegPrecise
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V:
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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