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NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae JJA
  • locus tag: SPJ_0765 [new locus tag: SPJ_RS03810 ]
  • pan locus tag?: PNEUPAN001772000
  • symbol: SPJ_0765
  • pan gene symbol?: nnrD
  • synonym:
  • product: putative YjeF homolog, C-terminus

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPJ_0765 [new locus tag: SPJ_RS03810 ]
  • symbol: SPJ_0765
  • product: putative YjeF homolog, C-terminus
  • replicon: chromosome
  • strand: +
  • coordinates: 734720..735559
  • length: 840
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGAAAGTGATTGATCAAGCCTTACTAGAAAAAGTTATTATTGAACGTTCTCGTACTAGT
    CATAAAGGAGACTATGGCCGTCTGCTGTTTCTTGGTGGAACTTATCCTTATGGTGGTGCC
    ATCATCATGGCTGCTTTGGCAGCTGTAAAAAGCGGTGCAGGATTGGTGACCGTTGGAACA
    GATAGGGAAAATATTCCAGCCCTGCACAGCCATTTACCTGAGGCTATGGCCTTTTCTCTT
    CAAGACCAGCAGTTGTTAAAAGAGCAATTGGAGAAGGCAGAAGTTGTCTTGCTGGGGCCG
    GGTTTACGAGACGATGCTTTTGGAGAAGATCTAGTTAAACAGGTCTTTGCTGGCTTAAGA
    CAAAATCAGATTTTGATTGTAGACGGAGGTGCCTTGACCATTCTTGCTAGGACAAGTTTG
    TCATTTTCCTCAAGCCAGCTTATCCTAACTCCTCACCAAAAAGAATGGGAAAAATTATCT
    GGAATTACGATTGAAAAGCAAAAGGAAGATGCAACGGCTAGTGCCCTAACTTCCTTCCCT
    CAAGGAACAATTTTGGTGGAGAAAGGTTCAGCTACTCGTATTTGGCAAGCTGGCCAATCA
    GATTATTACCAGTTACAGGTTGGCGGTCCCTATCAGGCGACTGGGGGAATGGGAGATACG
    CTTGCTGGGATGATTGCAGGATTTGCAGGCCAGTTTAAGCAAGCTAGTCTTTACGAACGT
    GTGGCAGTAGCGACCCATCTTCATTCAGCCATAGCCCAAGAACTAGCTCAAGAACAGTAT
    GTGGTTTTGCCAACGGAGATTAGTAATTGTCTTCCTAAAGTAATGAAAAGATATGTCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPJ_0765 [new locus tag: SPJ_RS03810 ]
  • symbol: SPJ_0765
  • description: putative YjeF homolog, C-terminus
  • length: 279
  • theoretical pI: 6.52028
  • theoretical MW: 30143.4
  • GRAVY: -0.00322581

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Unknown function General YjeF family C-terminal domain (TIGR00196; HMM-score: 171.3)
    and 1 more
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Thiamine hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase (TIGR00097; EC 2.7.1.49,2.7.4.7; HMM-score: 17.5)
  • TheSEED  :
    • ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136)
    Cell Wall and Capsule Cell Wall and Capsule - no subcategory YjeE  NAD(P)HX dehydratase
  • PFAM:
    Ribokinase (CL0118) Carb_kinase; Carbohydrate kinase (PF01256; HMM-score: 194.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helix: 1
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9991
    • Cytoplasmic Membrane Score: 0.0002
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0006
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.08096
    • TAT(Tat/SPI): 0.031854
    • LIPO(Sec/SPII): 0.006174
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKVIDQALLEKVIIERSRTSHKGDYGRLLFLGGTYPYGGAIIMAALAAVKSGAGLVTVGTDRENIPALHSHLPEAMAFSLQDQQLLKEQLEKAEVVLLGPGLRDDAFGEDLVKQVFAGLRQNQILIVDGGALTILARTSLSFSSSQLILTPHQKEWEKLSGITIEKQKEDATASALTSFPQGTILVEKGSATRIWQAGQSDYYQLQVGGPYQATGGMGDTLAGMIAGFAGQFKQASLYERVAVATHLHSAIAQELAQEQYVVLPTEISNCLPKVMKRYV

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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