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serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 30-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae R6
  • locus tag: spr0298 [new locus tag: SPR_RS01560 ]
  • pan locus tag?: PNEUPAN001122000
  • symbol: regR
  • pan gene symbol?: regR
  • synonym:
  • product: Transcription regulator, member of GalR family

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: spr0298 [new locus tag: SPR_RS01560 ]
  • symbol: regR
  • product: Transcription regulator, member of GalR family
  • replicon: chromosome
  • strand: +
  • coordinates: 298847..299914
  • length: 1068
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    GTGCTAGAAATAGGCATTTTGAATAGTGAATATGTTATAATAAGTATTAGTAGGAGGTGT
    TTTAGATTGGAGAAGAAACTGACCATAAAAGACATTGCGGAAATGGCTCAGACCTCGAAA
    ACAACCGTGTCATTTTACCTAAACGGGAAATATGAAAAAATGTCCCAAGAGACACGTGAA
    AAGATTGAAAAAGTTATTCATGAAACAAATTACAAACCGAGCATTGTTGCGCGTAGCTTA
    AACTCCAAACGAACAAAATTAATCGGTGTTTTGATCGGTGATATTACCAACAGTTTCTCA
    AACCAAATTGTTAAGGGAATTGAGGATATCGCCAGCCAGAATGGCTACCAGGTAATGATA
    GGAAATAGTAATTACAGCCAAGAGAGTGAGGACCGGTATATTGAAAGCATGCTTCTCTTG
    GGAGTAGACGGCTTTATTATTCAGCCGACCTCTAATTTCCGAAAATATTCTCGTATCATC
    GATGAGAAAAAGAAGAAAATGGTCTTTTTTGATAGTCAGCTCTATGAACACCGGACTAGC
    TGGGTTAAAACCAATAACTATGATGCCGTTTATGACATGACCCAGTCCTGTATCGAAAAA
    GGTTATGAGTATTTTCTCTTGATTACAGCGGATACGAGTCGTTTGAGTACTCGGATTGAG
    CGGGCAAGTGGTTTTGTGGATGCTTTAACAGATGCTAATATGCGTCACGCCAGTCTAACC
    ATTGAAGATAAGCATACGAATTTGGAACAAATTAAGGAATTTTTACAAAAAGAAATCGAT
    CCCGATGAAAAAACTCTGGTATTTATCCCTAACTGTTGGGCCCTACCTCTAGTCTTTACC
    GTTATCAAAGAGTTGAATTATAACTTGCCGCAAGTTGGGTTGATTGGTTTTGACAATACG
    GAGTGGACTTGCTTTTCTTCTCCAAGTGTTTCGACGCTGGTTCAGCCCTCCTTTGAGGAA
    GGACAACAGGCTACAAAGATTTTGATTGACCAGATTGAAGGCCGCAATCAAGAAGAAAGG
    CAACAAGTCTTGGATTGTAGTGTGAATTGGAAAGAGTCGACTTTCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1068

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: spr0298 [new locus tag: SPR_RS01560 ]
  • symbol: RegR
  • description: Transcription regulator, member of GalR family
  • length: 355
  • theoretical pI: 5.19595
  • theoretical MW: 40936.3
  • GRAVY: -0.395493

⊟Function[edit | edit source]

  • TIGRFAM:
    Signal transduction Regulatory functions DNA interactions catabolite control protein A (TIGR01481; HMM-score: 146.8)
    Signal transduction Regulatory functions DNA interactions D-fructose-responsive transcription factor (TIGR02417; HMM-score: 144.9)
    and 3 more
    Signal transduction Regulatory functions DNA interactions trehalose operon repressor (TIGR02405; HMM-score: 107.1)
    Signal transduction Regulatory functions DNA interactions transcriptional repressor BetI (TIGR03384; HMM-score: 15.5)
    RNA polymerase sigma-70 factor, Myxococcales family 1 (TIGR03001; HMM-score: 11)
  • TheSEED  :
    • Transcriptional regulator RegR, rpressor of hyaluronate and KDG utilization
  • PFAM:
    HTH (CL0123) LacI; Bacterial regulatory proteins, lacI family (PF00356; HMM-score: 62)
    Periplas_BP (CL0144) Peripla_BP_1; Periplasmic binding proteins and sugar binding domain of LacI family (PF00532; HMM-score: 60.6)
    Peripla_BP_4; Periplasmic binding protein domain (PF13407; HMM-score: 57.3)
    Peripla_BP_3; Periplasmic binding protein-like domain (PF13377; HMM-score: 51.7)
    and 7 more
    HTH (CL0123) HTH_3; Helix-turn-helix (PF01381; HMM-score: 25.2)
    HTH_19; Helix-turn-helix domain (PF12844; HMM-score: 23)
    TetR_C (CL0174) TetR_C_17; Tetracyclin repressor-like, C-terminal domain (PF17922; HMM-score: 13.3)
    HTH (CL0123) HTH_40; Helix-turn-helix domain (PF14493; HMM-score: 13.1)
    HTH_38; Helix-turn-helix domain (PF13936; HMM-score: 13)
    Terminase_5; Putative ATPase subunit of terminase (gpP-like) (PF06056; HMM-score: 12.3)
    GerE; Bacterial regulatory proteins, luxR family (PF00196; HMM-score: 12.1)

⊟Structure, modifications & cofactors[edit | edit source]

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.95
    • Cytoplasmic Membrane Score: 0.05
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003136
    • TAT(Tat/SPI): 0.000632
    • LIPO(Sec/SPII): 0.000952
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MLEIGILNSEYVIISISRRCFRLEKKLTIKDIAEMAQTSKTTVSFYLNGKYEKMSQETREKIEKVIHETNYKPSIVARSLNSKRTKLIGVLIGDITNSFSNQIVKGIEDIASQNGYQVMIGNSNYSQESEDRYIESMLLLGVDGFIIQPTSNFRKYSRIIDEKKKKMVFFDSQLYEHRTSWVKTNNYDAVYDMTQSCIEKGYEYFLLITADTSRLSTRIERASGFVDALTDANMRHASLTIEDKHTNLEQIKEFLQKEIDPDEKTLVFIPNCWALPLVFTVIKELNYNLPQVGLIGFDNTEWTCFSSPSVSTLVQPSFEEGQQATKILIDQIEGRNQEERQQVLDCSVNWKESTF

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: RegR (repression) regulon
    RegR(TF)important in Hyaluronate utilization; RegPrecise    transcription unit transferred from TIGR4 data RegPrecise 

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Sabine Chapuy-Regaud, A David Ogunniyi, Nicole Diallo, Yvette Huet, Jean-François Desnottes, James C Paton, Sonia Escaich, Marie-Claude Trombe
RegR, a global LacI/GalR family regulator, modulates virulence and competence in Streptococcus pneumoniae.
Infect Immun: 2003, 71(5);2615-25
[PubMed:12704136] [WorldCat.org] [DOI] (P p)

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