From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 30-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae R6
  • locus tag: spr1060 [new locus tag: SPR_RS05295 ]
  • pan locus tag?: PNEUPAN002033000
  • symbol: phpA
  • pan gene symbol?: phtB
  • synonym:
  • product: Histidine Motif-Containing protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: spr1060 [new locus tag: SPR_RS05295 ]
  • symbol: phpA
  • product: Histidine Motif-Containing protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1054238..1056805
  • length: 2568
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: AE007317 (1054238..1056805) NCBI
  • BioCyc: SPR1060 BioCyc
  • MicrobesOnline: 133945 MicrobesOnline
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    GTGAATCAAATATACTTAAGAAAAGAGGAAAGAATGAAAATCAATAAAAAATATCTAGCT
    GGGTCAGTAGCTACACTTGTTTTAAGTGTCTGTGCTTATGAACTAGGTTTGCATCAAGCT
    CAAACTGTAAAAGAAAATAATCGTGTTTCCTATATAGATGGAAAACAAGCGACGCAAAAA
    ACGGAGAATTTGACTCCTGATGAGGTTAGCAAGCGTGAAGGAATCAATGCCGAACAAATC
    GTCATCAAAATAACAGACCAAGGCTATGTCACTTCACATGGGGACCACTATCATTATTAC
    AATGGTAAGGTTCCTTATGACGCTATCATCAGTGAAGAATTGCTGATGAAGGATCCAAAC
    TACCAGCTAAAGGACGAGGATATTATCAGTGAAATCAAGGGTGGTTATGTGATTAAGGTA
    GATGGAAAATACTATGTTTACCTTAAGGATGCAGCTCATGCGGATAATGTCCGTACAAAA
    GAAGAAATCAATCGACAAAAACAAGAGCATAGTCAACATCGTGAAGGTGGGACTCCAAGA
    AACGATGGTGCTGTTGCCTTGGCACGTTCACAGGGACGCTACACCACAGATGATGGTTAT
    ATCTTTAATGCTTCTGATATCATTGAAGATACTGGTGATGCTTATATCGTTCCTCACGGC
    GACCATTACCATTACATTCCTAAGAATGAGTTATCAGCTAGCGAGTTAGCTGCTGCAAAA
    GCCTTCCTATCTGGTCGGGGAAATCTGTCAAATTCAAGAACCTATCGCCGACAAAATAGC
    GATAACACTTCAAGAACAAACTGGGTACCTTCTGTAAGCAATCCAGGAACTACAAATACT
    AACACAAGCAACAACAGCAACACTAACAGTCAAGCAAGTCAAAGTAATGACATTGATAGT
    CTCTTGAAACAGCTCTACAAACTGCCTTTGAGTCAACGCCATGTAGAATCTGATGGCCTT
    ATTTTCGACCCAGCGCAAATCACAAGTCGAACCGCCAATGGTGTTGCTGTACCGCACGGA
    GACCATTATCACTTTATTCCTTATTCACAACTGTCACCTTTGGAAGAAAAATTGGCTCGT
    ATTATTCCCCTTCGTTATCGTTCAAACCATTGGGTACCAGATTCAAGACCAGAACAACCA
    AGTCCACAATCGACTCCGGAACCTAGTCCAAGTCCGCAACCTGCACCAAATCCTCAACCA
    GCTCCAAGCAATCCAATTGATGAGAAATTGGTCAAAGAAGCTGTTCGAAAAGTAGGCGAT
    GGTTATGTCTTTGAGGAGAATGGAGTTCCTCGTTATATCCCAGCCAAGGATCTTTCAGCA
    GAAACAGCAGCAGGCATTGATAGCAAACTGGCCAAGCAGGAAAGTTTATCTCATAAGCTA
    GGAGCTAAGAAAACTGACCTCCCATCTAGTGATAGAGAATTTTACAATAAGGCTTATGAC
    TTACTAGCAAGAATTCATCAAGATTTACTTGATAATAAAGGTCGACAAGTTGATTTTGAG
    GCTTTGGATAACCTGTTGGAACGACTCAAGGATGTCTCAAGTGATAAAGTCAAGTTAGTG
    GATGATATTCTTGCCTTCTTAGCTCCGATTCGTCATCCAGAACGTTTAGGAAAACCAAAT
    GCGCAAATTACCTACACTGATGATGAGATTCAAGTAGCCAAGTTGGCAGGCAAGTACACA
    ACAGAAGACGGTTATATCTTTGATCCTCGTGATATAACCAGTGATGAGGGGGATGCCTAT
    GTAACTCCACATATGACCCATAGCCACTGGATTAAAAAAGATAGTTTGTCTGAAGCTGAG
    AGAGCGGCAGCCCAGGCTTATGCTAAAGAGAAAGGTTTGACCCCTCCTTCGACAGACCAT
    CAGGATTCAGGAAATACTGAGGCAAAAGGAGCAGAAGCTATCTACAACCGCGTGAAAGCA
    GCTAAGAAGGTGCCACTTGATCGTATGCCTTACAATCTTCAATATACTGTAGAAGTCAAA
    AACGGTAGTTTAATCATACCTCATTATGACCATTACCATAACATCAAATTTGAGTGGTTT
    GACGAAGGCCTTTATGAGGCACCTAAGGGGTATAGTCTTGAGGATCTTTTGGCGACTGTC
    AAGTACTATGTCGAACATCCAAACGAACGTCCGCATTCAGATAATGGTTTTGGTAACGCT
    AGCGACCATGTTCAAAGAAACAAAAATGGTCAAGCTGATACCAATCAAACGGAAAAACCA
    AACGAGGAGAAACCTCAGACAGAAAAACCTGAGGAAGAAACCCCTCGAGAAGAGAAACCG
    CAAAGCGAGAAACCAGAGTCTCCAAAACCAACAGAGGAACCAGAAGAAGAATCACCAGAA
    GAATCACCAGAGGAATCAGAAGAACCTCAGGTCGAGACTGAAAAGGTTAAAGAAAAACTG
    AGAGAGGCTGAAGATTTACTTGGAAAAATCCAGAATCCAATTATCAAGTCCAATGCCAAA
    GAGACTCTCACAGGATTAAAAAATAATTTACTATTTGGCACCCAGGACAACAATACTATT
    ATGGCAGAAGCTGAAAAACTATTGGCTTTATTAAAGGAGAGTAAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2340
    2400
    2460
    2520
    2568

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: spr1060 [new locus tag: SPR_RS05295 ]
  • symbol: PhpA
  • description: Histidine Motif-Containing protein
  • length: 855
  • theoretical pI: 5.31938
  • theoretical MW: 96176.6
  • GRAVY: -0.93883

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Pathogenesis streptococcal histidine triad protein (TIGR01363; HMM-score: 740.6)
    and 1 more
    cobaltochelatase subunit (TIGR02442; EC 6.6.1.2; HMM-score: 5.4)
  • TheSEED  :
    • Streptococcal histidine triad protein
  • PFAM:
    no clan defined Strep_his_triad; Streptococcal histidine triad protein (PF04270; HMM-score: 249.8)
    and 3 more
    PHtD_u1; Unstructured region on Pneumococcal histidine triad protein (PF16645; HMM-score: 93.3)
    RNR_Alpha; Ribonucleotide reductase alpha domain (PF17975; HMM-score: 14.4)
    Rx_N; Rx N-terminal domain (PF18052; HMM-score: 11.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • SignalP: Signal peptide LIPO(Sec/SPII) length 30 aa
    • SP(Sec/SPI): 0.394083
    • TAT(Tat/SPI): 0.011059
    • LIPO(Sec/SPII): 0.422077
    • Cleavage Site: CS pos: 30-31. LSV-CA. Pr: 0.3997
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNQIYLRKEERMKINKKYLAGSVATLVLSVCAYELGLHQAQTVKENNRVSYIDGKQATQKTENLTPDEVSKREGINAEQIVIKITDQGYVTSHGDHYHYYNGKVPYDAIISEELLMKDPNYQLKDEDIISEIKGGYVIKVDGKYYVYLKDAAHADNVRTKEEINRQKQEHSQHREGGTPRNDGAVALARSQGRYTTDDGYIFNASDIIEDTGDAYIVPHGDHYHYIPKNELSASELAAAKAFLSGRGNLSNSRTYRRQNSDNTSRTNWVPSVSNPGTTNTNTSNNSNTNSQASQSNDIDSLLKQLYKLPLSQRHVESDGLIFDPAQITSRTANGVAVPHGDHYHFIPYSQLSPLEEKLARIIPLRYRSNHWVPDSRPEQPSPQSTPEPSPSPQPAPNPQPAPSNPIDEKLVKEAVRKVGDGYVFEENGVPRYIPAKDLSAETAAGIDSKLAKQESLSHKLGAKKTDLPSSDREFYNKAYDLLARIHQDLLDNKGRQVDFEALDNLLERLKDVSSDKVKLVDDILAFLAPIRHPERLGKPNAQITYTDDEIQVAKLAGKYTTEDGYIFDPRDITSDEGDAYVTPHMTHSHWIKKDSLSEAERAAAQAYAKEKGLTPPSTDHQDSGNTEAKGAEAIYNRVKAAKKVPLDRMPYNLQYTVEVKNGSLIIPHYDHYHNIKFEWFDEGLYEAPKGYSLEDLLATVKYYVEHPNERPHSDNGFGNASDHVQRNKNGQADTNQTEKPNEEKPQTEKPEEETPREEKPQSEKPESPKPTEEPEEESPEESPEESEEPQVETEKVKEKLREAEDLLGKIQNPIIKSNAKETLTGLKNNLLFGTQDNNTIMAEAEKLLALLKESK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: AdcR (repression) regulon
    AdcR(TF)important in Zinc homeostasis; RegPrecise 

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=spr1060&oldid=129719"