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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN001120000
- symbol?: cps2A
- synonym: cps4A
- description?: capsular polysaccharide--peptidoglycan transferase Cps4A
- capsular polysaccharide--peptidoglycan transferase Cps4A
- integral membrane regulatory protein Wzg
- LCP family glycopolymer transferase CpsA
- LCP family protein
- integral membrane regulatory protein Wzg (pseudogene)
- LytR family transcriptional regulator
- capsular polysaccharide biosynthesis protein Cps14A
- capsular polysaccharide biosynthesis protein Cps4A
- Putative transcriptional regulator YwtF
- capsule biosynthesis integral membrane regulatory protein Wzg
- cell envelope-like function transcriptional attenuator common domain protein
- cell envelope-related function transcriptional attenuator common domain protein
- Cps23fA
- Exopolysaccharide biosynthesis transcriptional activator EpsA
- Exopolysaccharide biosynthesis transcriptional regulator Cps2A
- integral membrane regulatory protein
- integral membrane regulatory protein Cps2A
- Polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagU
- The type 2 capsule locus of Streptococcus pneumoniae
- pseudogene
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1328681..1329624
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
(12F)
ASP0581:
EL334_RS01865 (cps4A)
(19F)
ATCC 49619:
EL263_RS01900 (cps4A)
(23F)
ATCC 700669:
SPN23F_RS01645 (cps4A)
(14)
INV200:
SPNINV200_RS01655 (cps4A)
(14)
JJA:
SPJ_RS01695 (cps4A)
(19F)
MDRSPN001:
MDRSPN_RS01685 (cps4A)
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MSRRFKKSRSQKVKRSVNIVLLTIYLLLVCFLLFLIFKYNILAFRYLNLVVTALVLLVAL
D39 MSRRFKKSRSQKVKRSVNIVLLTIYLLLVCFLLFLIFKYNILAFRYLNLVVTALVLLVAL
D39V MSRRFKKSRSQKVKRSVNIVLLTIYLLLVCFLLFLIFKYNILAFRYLNLVVTALVLLVAL
Hungary19A-6 MSRRFKKSGSQKVKRSVNIVLLTIYLLLVCFLLFLIFKYNILAFRYLNLVVTALVLLVAL
EF3030 MSRRFKKSRSQKVKRSVNIVLLTIYLLLVCFLLFLIFKYNILAFRYLNLVITALVLLVAL
******** *****************************************:*********
TIGR4 VGLLLIIYKKAEKFTIFLLVFSILVSSVSLFAVQQFVGLTNRLNATSNYSEYSISVAVLA
D39 VGLLLIIYKKAEKFTIFLLVFSILVSSVSLFAVQQFVGLTNRLNATSNYSEYSLSVAVLA
D39V VGLLLIIYKKAEKFTIFLLVFSILVSSVSLFAVQQFVGLTNRLNATSNYSEYSLSVAVLA
Hungary19A-6 VGLLLIIYKKAEKFTIFLLLFSILVSSVSLFAVQQFVGLTNRLNAASNYSEYSISVAVLA
EF3030 LGLLLIIYKKAEKFTIFLLVFSILVSSVSLFAVQQFVGLTNRLNATSNYSEYSISVAVLA
:******************:*************************:*******:******
TIGR4 DSEIENVTQLTSVTAPTGTNNENIQKLLADIKSSQNTDLTVNQSSSYLAAYKSLIAGETK
D39 DSEIENVTQLTSVTAPTGTDNENIQKLLADIKSSQNTDLTVNQSSSYLAAYKSLIAGETK
D39V DSEIENVTQLTSVTAPTGTDNENIQKLLADIKSSQNTDLTVNQSSSYLAAYKSLIAGETK
Hungary19A-6 DSEIENVTQLTSVTAPTGTDNENIQKLLADIKSSQNTDLTVNQSSSYLAAYKSLIAGETK
EF3030 DSDIENVTQLTSVTAPTGTDNENIQKLLADIKSSQNTDLTVNQSSSYLAVYKSLIAGETK
**:****************:*****************************.**********
TIGR4 AIVLNSVFENIIESEYPDYASKIKKIYTKGFTKKVEAPKTSKSQSFNIYVSGIDTYGPIS
D39 AIVLNSVFENIIELEYPDYASKIKKIYTKGFTKKVEAPKTSKNQSFNIYVSGIDTYGPIS
D39V AIVLNSVFENIIELEYPDYASKIKKIYTKGFTKKVEAPKTSKNQSFNIYVSGIDTYGPIS
Hungary19A-6 AIVLNSVFENIIESEYPDYASKIKKIYTKGFTKKVEAPKTSKNQSFNIYVSGIDTYGPIS
EF3030 AIVLNSVFENIIESEYPDYASKIKKIYTKGFTKKVEAPKTSKNQSFNIYVSGIDTYGPIS
************* ****************************.*****************
TIGR4 SVSRSDVNILMTVNRDTKKILLTTTPRDAYVPIADGGNNQKDKLTHAGIYGVDSSIHTLE
D39 SVSRSDVNILMTVNRDTKKILLTTTPRDAYVPIADGGNNQKDKLTHAGIYGVDSSIHTLE
D39V SVSRSDVNILMTVNRDTKKILLTTTPRDAYVPIADGGNNQKDKLTHAGIYGVDSSIHTLE
Hungary19A-6 SVSRSDVNILMTVNRDTKKILLTTTPRDAYVPIADGGNNQKDKLTHAGIYGVDSSIHTLE
EF3030 SVSRSDVNILMTVNRDTKKILLTTTPRDAYVPIADGGNNQKDKLTHAGIYGVDSSIHTLE
************************************************************
TIGR4 NLYGVDINYYVRLNFTSFLKLIDLLGGIDVYNDQEFTAHTNGKYYPAGNVHLDSEQALGF
D39 NLYGVDINYYVRLNFTSFLKMIDLLGGVDVHNDQEFSALHGKFHFPVGNVHLDSEQALGF
D39V NLYGVDINYYVRLNFTSFLKMIDLLGGVDVHNDQEFSALHGKFHFPVGNVHLDSEQALGF
Hungary19A-6 NLYGVDINYYVRLNFTSFLKLIDLLGGVDVHNDQEFSALHGKFHFPVGNVHLDSEQALGF
EF3030 NLYGVDINYYVRLNFTSFLKMIDLLGGVDVHNDQEFSALHGKFHFPVGNVHLDSEQALGF
********************:******:**:*****:* . ::*.*************
TIGR4 VRERYSLADGDRDRGRHQQKVIVAILQKLTSTEVLKNYSTIINSLQDSIQTNMPLETMIN
D39 VRERYSLADGDRDRGRNQQKVIVAILQKLTSTEALKNYSTIINSLQDSIQTNVPLETMIN
D39V VRERYSLADGDRDRGRNQQKVIVAILQKLTSTEALKNYSTIINSLQDSIQTNVPLETMIN
Hungary19A-6 VRERYSLADGDRDRGRNQQKVIVAILQKLTSTEALKNYGTIINSLQDSIQTNMPLETMIN
EF3030 VRERYSLADGDRDRGRNQQKVIVAIIQKLTSTEVLKNYSSILQGLQDSLQTNMPIETMID
****************:********:*******.****.:*::.****:***:*:****:
TIGR4 LVNAQLESGGNYKVNSQDLKGTGRMDLPSYAMPDSNLYVMEIDDSSLAVVKAAIQDVMEG
D39 LVNAQLESGGNYKVNSQDLKGTGRMDLPSYAMPDSNLYVMEIDDSSLAVVKAAIQDVMEG
D39V LVNAQLESGGNYKVNSQDLKGTGRMDLPSYAMPDSNLYVMEIDDSSLAVVKAAIQDVMEG
Hungary19A-6 LVNAQLESGGNYKVNSQDLKGTGRMDLPSYAMPDSNLYVLEIDDSSLAVVKAAIQDVMEG
EF3030 LVNTQLESGGNYKVNSQDLKGTGRMDLPSYAMPDSNLYVMEIDDSSLAVVKAAIQDVMEG
***:***********************************:********************
TIGR4 R
D39 R
D39V R
Hungary19A-6 R
EF3030 R
*