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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN001120000
- symbol?: —
- synonym:
- description?: alginate lyase family protein
- alginate lyase family protein
- oligohyaluronate lyase
- Heparinase II/III-like protein
- conserved hypothetical protein
- heparinase
- heparinase II/III-family protein
- heparinase II/III-like family protein
- pseudogene
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1302023..1305334
- occurrence?: in 100% of 41 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
D39 MKEERRQFFERVDGNQCRDYILSHCSKDYEKVKSSLERLIDNRFMFDSPWDMEPCSKIHQ
D39V MKEERRQFFERVDGNQCRDYILSHCSKDYEKVKSSLERLIDNRFMFDSPWDMEPCSKIHQ
Hungary19A-6 MKEERRQFFERVDGNQCRDYILSHCSKDYEKVKSSLERLMDNRFMFDSPWDMEPCSKIHQ
EF3030 MKEERRQFFERIDGNQCRDYILSHCSKDYEKVKSSLERLMDNRFMFDSPWDMEPCSKIHQ
***********:***************************:********************
D39 IQPMVWDQVFEDDPEWSYMLNRQEYLLQFMIGYLVEGDKGYIQKCKFFLFDWIEQVREFS
D39V IQPMVWDQVFEDDPEWSYMLNRQEYLLQFMIGYLVEGDKGYIQKCKFFLFDWIEQVREFS
Hungary19A-6 IQPMVWDQVFEDDPEWSYMLNRQEYLLQFMIGYLVEGDKDYIQKCKFFLFDWIEQVREFS
EF3030 IQPMVWDQVFEYDPEWSYMLNRQEYLLQFMIGYLVEGDKDYIQKCKFFLFDWIEQVREFS
*********** ***************************.********************
D39 PQSLMTRTLDTGIRSFTWLKLLLLLLKFDLLEEKELEKILVSLEKQIDFMKSYYRAKYTL
D39V PQSLMTRTLDTGIRSFTWLKLLLLLLKFDLLEEKELEKILVSLEKQIDFMKSYYRAKYTL
Hungary19A-6 PQSLMTRTLDTGIRSFTWLKLLLLLLKFDLLEEKELEKILVSLEKQIDFMKSYYRAKYTL
EF3030 PQSLMTRTLDTGIRSFTWLKLLLLLLKFDLLEEKELEKILVSLEKQIDFMKSYYRAKYTL
************************************************************
D39 SNWGILQTIPMLAIYHFFSDKMDLEEAYHFASEELKQQIETQILGDGSQFEQSILYHVEV
D39V SNWGILQTIPMLAIYHFFSDKMDLEEAYHFASEELKQQIETQILGDGSQFEQSILYHVEV
Hungary19A-6 SNWGILQTIPMLAIYHFFSDKMDLEEAYHFASEELKQQIETQILGYGSQFEQSILYHVEV
EF3030 SNWGILQTIPMLAIYHFFSDKMDLEEAYHFASEELKQQIETQILGDGSQFEQSILYHVEV
********************************************* **************
D39 YKALLDLCLLLPDLQDSYQELLEKMATYIQMMTGLDGRTLAFGDSDSTETTEMLSLSAVV
D39V YKALLDLCLLLPDLQDSYQELLEKMATYIQMMTGLDGRTLAFGDSDSTETTEMLSLSAVV
Hungary19A-6 YKALLDLCLLLPDLQDSYRELLEKMATYIQMMTGLDGRTLAFGDSDSTETTEILSLSAVV
EF3030 YKALLDLCLLLPDLQDSYQELLEKMATYIQMMTGLDGRTLAFGDSDSTETTEILSLSAVV
******************:*********************************:*******
D39 LNKEDLLNGLDVKVDLLSILFLGREKVKRLQEFERRAWQPKSMIFEDSGHVCIKDEHRYL
D39V LNKEDLLNGLDVKVDLLSILFLGREKVKRLQEFERRAWQPKSMIFEDSGHVCIKDEHRYL
Hungary19A-6 LNKEDLLNGLDVKVDLLSLLFLGREKVKRLQEFERRAWQPKSMIFEDSGHVCIKDEHRYL
EF3030 LNKEDLLNGLDVKVDLLSLLFLGREKVKRLQEFERRAWQPKSMIFEDSGHVCIKDEHRYL
******************:*****************************************
D39 FFKNGPLGSAHSHSDENSFCLQYQGQPIFIDAGRYSYREIYERYLLKSAWSHSTCIVDGK
D39V FFKNGPLGSAHSHSDENSFCLQYQGQPIFIDAGRYSYREIYERYLLKSAWSHSTCIVDGK
Hungary19A-6 FFKNGPLGSAHSHSDENSFCLQYQGQPIFIDAGRYSYREIYERYLLKSAWSHSTCIVDGK
EF3030 FFKNGPLGSAHSHSDENSFCLQYQGQPIFIDAGRYSYREIYERYLLKSAWSHSTCIVDGK
************************************************************
D39 APERITGSWEYEYYPHSLFCHHKEREGMHYIEGAYWSAEPDLPYLHKRKILMLVEDVWLL
D39V APERITGSWEYEYYPHSLFCHHKEREGMHYIEGAYWSAEPDLPYLHKRKILMLVEDVWLL
Hungary19A-6 APERITGSWEYEYYPHSLFCHHKEREGVHYIEGAYWSAEPDLPYLHKRKILMLVEDVWLL
EF3030 APERITGSWEYEYYPHSLFCHHKEREGMHYIEGAYWSAEPDLPYLHKRKILMLVEDVWLL
***************************:********************************
D39 VDDIRCQGQHEALTQFILDKDVTYQDGKINQLRLWSEVDFDLEDTIISPKYNELERSSKL
D39V VDDIRCQGQHEALTQFILDKDVTYQDGKINQLRLWSEVDFDLEDTIISPKYNELERSSKL
Hungary19A-6 VDDIRCQGQHEALTQFILDKDVTYQDGKINQLRLWSEVDFDLEDTIISPKYNELERSNKL
EF3030 VDDIRCQGQHEALTQFILDKDVTYQDGKINQLRLWSEVDFDLEDTIISPKYNELERSSKL
*********************************************************.**
D39 TKRQFFENQMLDYTIIAHESFEIIRHSVYQTDDREVENALAFEVKNDETDKLILLLSEDI
D39V TKRQFFENQMLDYTIIAHESFEIIRHSVYQTDDREVENALAFEVKNDETDKLILLLSEDI
Hungary19A-6 TKRQFFENQMLDYTIIAHESFEIIRHSVYQTDDREVENALAFEVKNDETDKLILLLSEDI
EF3030 TKRQFFENQMLDYTIIAHESFEIIRHSVYQTDDREVENALAFEVKNDETDKLILLLSEDI
************************************************************
D39 RVGEKLCLVDGTKMRGKCLVYDKINERMIRLQC
D39V RVGEKLCLVDGTKMRGKCLVYDKINERMIRLQC
Hungary19A-6 CVGEKLCLVDGTKMRGKCLVYDKINERMIRLQC
EF3030 GVGEKLCLVDGTKMRGKCLVYDKINERMIRLQC
********************************