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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN001212000
- symbol?: cbpF
- synonyms: cbpC, cbpJ
- description?: choline-binding protein CbpC
- choline-binding protein CbpC
- choline binding protein C
- Choline-binding protein F
- choline-binding protein J
- Autolysin
- choline-binding protein
- choline-binding protein CbpJ
- cell wall-binding repeat protein
- choline-binding protein Cbp9
- Choline-binding protein CbpF
- Toxin A
- pseudogene
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1513163..1514396
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
SPN034183:
SPN034183_RS02035 (cbpC)
SPN994038:
SPN994038_RS01960 (cbpC)
SPN994039:
SPN994039_RS01955 (cbpC)
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MKLLKKMMQVALAVFFFGLLATNTVFANTTGGRFVDKDNRKYYVKDDHKAIYWHKIDGKT
D39 MKLLKKMMQVLLAVFFFGLLATNTVFANTTGGRFVDKDNRKYYVKDDHKAIYWHKIDGKT
D39V MKLLKKMMQVLLAVFFFGLLATNTVFANTTGGRFVDKDNRKYYVKDDHKAIYWHKIDGKT
Hungary19A-6 MKLLKKMMPIALAVFFFGLLATNTVFANTTGGRFVDKDNRKYYVKDDHKAIYWHKIDGKT
EF3030 MKLLKKMMQVLLAVFFFGLLATNTVFANTTGGRFVDKDNRKYYVKDDHKAIYWHKIDGKT
******** : *************************************************
TIGR4 YYFGDIGEMVVGWQYLEIPGTGYRDNLFDNQPVNEIGLQEKWYYFGQDGALLEQTDKQVL
D39 YYFGDIGEMVVGWQYLEIPGTGYRDNLFDNQPVNEIGLQEKWYYFGQDGALLEQTDKQVL
D39V YYFGDIGEMVVGWQYLEIPGTGYRDNLFDNQPVNEIGLQEKWYYFGQDGALLEQTDKQVL
Hungary19A-6 YYFGDIGEMVVGWQYLEIPGTGYRDNLFDNQPVNEIGLQEKWYYFGQDGALLEQTDKQVL
EF3030 YYFGDIGEMVVGWQYLEIPGTGYRDNLFDNQPVNEIGLQEKWYYFGQDGALLEQTDKQVL
************************************************************
TIGR4 EAKTSENTGKVYGEQYPLSAEKRTYYFDNNYAVKTGWIYEEGHWYYLNKLGNFGDDSYNP
D39 EAKTSENTGKVYGEQYPLSAEKRTYYFDNNYAVKTGWIYEDGNWYYLNKLGNFGDDSYNP
D39V EAKTSENTGKVYGEQYPLSAEKRTYYFDNNYAVKTGWIYEDGNWYYLNKLGNFGDDSYNP
Hungary19A-6 EAKTSENTGKVYGEQYPLSAEKRTYYFDNNYAVKTGWIYEEGHWYYLNKLGNFGDDSYNP
EF3030 EAKTSENTGKVYGEQYPLSAEKRTYYFDNNYAVKTGWIYEDGNWYYLNKLGNFGDDSYNP
****************************************:*:*****************
TIGR4 LPIGEVAKGWTQDFHVTIDIDRSKPAPWYYLDA-SGKMLTDWQKVNGKWYYFGSSGSMAT
D39 LPIGEVAKGWTQDFHVTIDIDRSKPAPWYYLDA-SGKMLTDWQKVNGKWYYFGSSGSMAT
D39V LPIGEVAKGWTQDFHVTIDIDRSKPAPWYYLDA-SGKMLTDWQKVNGKWYYFGSSGSMAT
Hungary19A-6 LPIGEVAKGWTQDFHVTIDIDRSKPAPWYYLDPTTGIMQTGWQYLGNKWYYLRSSGAMAT
EF3030 LPIGEVAKGWTQDFHVTIDIDRSKPAPWYYLDPETGIMRTGWQYLGNNWYYLRSSGAMAT
********************************. :* * *.** :..:***: ***:***
TIGR4 GWKYVRGKWYYLDNKNGDMKTGWQYLGNKWYYLRSSGAMVTGWYQDGSTWYYLDPSNGDM
D39 GWKYVRGKWYYLDNKNGDMKTGWQYLGNKWYYLRSSGAMVTGWYQDGLTWYYLNAGNGDM
D39V GWKYVRGKWYYLDNKNGDMKTGWQYLGNKWYYLRSSGAMVTGWYQDGLTWYYLNAGNGDM
Hungary19A-6 GWYQEGTTWYYLDHPNGDMKTGWQNLGNKWYYLRSSGAMATGWYQDGSTWYYLNAGNGDM
EF3030 GWKYVRGKWYYLDNKNGDMK--------------------TGWYQDGSTWYYLDPSNGDM
** .*****: ***** ******* *****:..****
TIGR4 KIGWTKVNGKWYYLNSNGAMVTGSQTIDGKVYNFASSGEWI-
D39 KTGWFQVNGKWYYAYSSGALAVNT-TVDGYSVNY--NGEWVQ
D39V KTGWFQVNGKWYYAYSSGALAVNT-TVDGYSVNY--NGEWVQ
Hungary19A-6 KTGWFQVNGNWYYAYSSGALAVNT-TVDGYSVNY--NGEWVR
EF3030 KIGWTKVNGKWYYLNSNGAMVTGSQTIDGKVYNFASSGEWI-
* ** :***:*** *.**:...: *:** *: .***: