PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BM6001

serotype 19F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7465

serotype 1

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

⊟Summary

• pan ID^?: PNEUPAN001212000
• symbol^?: cbpF
• synonyms: cbpC, cbpJ
• description^?: choline-binding protein CbpC

  descriptions from strain specific annotations:

  • choline-binding protein CbpC
  • choline binding protein C
  • Choline-binding protein F
  • choline-binding protein J
  • Autolysin
  • choline-binding protein
  • choline-binding protein CbpJ
  • cell wall-binding repeat protein
  • choline-binding protein Cbp9
  • Choline-binding protein CbpF
  • Toxin A
  • pseudogene
• strand^?: +
• coordinates^?: 1513163..1514396
• occurrence^?: in 100% of 43 strains

⊟Orthologs

(4)^?
TIGR4:
SP_RS01845 (cbpC)
(2)
D39:
SPD_RS01875 (cbpC)
(2)
D39V:
SPV_RS01875 (cbpC)
(19A)
Hungary19A-6:
SPH_RS02355 (cbpC)
(19F)
EF3030:
EF3030_RS01830 (cbpC)
(6B)^?
670-6B:
SP670_RS02240 (cbpC)
(6A)
6A-10:
HKM25_RS01950 (cbpC)
(5)
70585:
SP70585_RS02200 (cbpC)
(19F)
A026:
T308_RS01865 (cbpC)
(3)
A66:
A66_RS01805 (cbpC)
(11A)
AP200:
SPAP_RS01985 (cbpC)
(12F)
ASP0581:
EL334_RS02050 (cbpC)
(19F)
ATCC 49619:
EL263_RS02055 (cbpC)
(23F)
ATCC 700669:
SPN23F_RS01800 (cbpJ)
(19F)
BM6001:
ODS73_RS02310 (cbpC)
(1)
BVJ1JL:
JN057_RS02040 (cbpC)
(14)
CGSP14:
SPCG_RS01950 (cbpJ)
(19F)
G54:
SPG_RS01740 (cbpC)
(1)
gamPNI0373:
HMPREF1038_RS02115 (cbpC)
(3)
HU-OH:
EL271_RS01820 (cbpC)
(19A)
Hu15:
SPNHU15_RS02125 (cbpC)
(19A)
Hu17:
SPNHU17_RS02055 (cbpC)
(1)
INV104:
INV104_RS01895 (cbpC)
(14)
INV200:
SPNINV200_RS01805 (cbpC)
(14)
JJA:
SPJ_RS01840 (cbpC)
(19F)
MDRSPN001:
MDRSPN_RS01825 (cbpC)
(1)
NCTC7465:
AT689_RS00595 (cbpC)
(2)
NCTC7466:
DQM66_RS01875 (cbpC)
(4)
NU83127:
EL277_RS01950 (cbpC)
(3)
OXC141:
SPNOXC_RS02025 (cbpC)
(1)
P1031:
SPP_RS02065 (cbpC)
(2)
R6:
SPR_RS01750 (cbpC)
(19A)
SP49:
BMJ42_RS02530 (cbpC)
(1)
SPN032672:
SPN032672_RS08195 (cbpC)
(3)
SPN034156:
SPN034156_RS07950 (cbpC)
(3)
SPN034183:
SPN034183_RS02035 (cbpC)
(3)
SPN994038:
SPN994038_RS01960 (cbpC)
(3)
SPN994039:
SPN994039_RS01955 (cbpC)
(3)
SPNA45:
SPNA45_RS09365
(19F)
ST556:
MYY_RS02335 (cbpC)
(19F)
Taiwan19F-14:
SPT_RS02125 (cbpC)
(19A)
TCH8431/19A:
HMPREF0837_RS03290 (cbpC)
(4)
Xen35:
CXP32_RS01905 (cbpC)

⊟Genome Viewer

TIGR4
D39
D39V
Hungary19A-6
EF3030

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
  
  
  TIGR4           MKLLKKMMQVALAVFFFGLLATNTVFANTTGGRFVDKDNRKYYVKDDHKAIYWHKIDGKT
  D39             MKLLKKMMQVLLAVFFFGLLATNTVFANTTGGRFVDKDNRKYYVKDDHKAIYWHKIDGKT
  D39V            MKLLKKMMQVLLAVFFFGLLATNTVFANTTGGRFVDKDNRKYYVKDDHKAIYWHKIDGKT
  Hungary19A-6    MKLLKKMMPIALAVFFFGLLATNTVFANTTGGRFVDKDNRKYYVKDDHKAIYWHKIDGKT
  EF3030          MKLLKKMMQVLLAVFFFGLLATNTVFANTTGGRFVDKDNRKYYVKDDHKAIYWHKIDGKT
                  ******** : *************************************************
  
  TIGR4           YYFGDIGEMVVGWQYLEIPGTGYRDNLFDNQPVNEIGLQEKWYYFGQDGALLEQTDKQVL
  D39             YYFGDIGEMVVGWQYLEIPGTGYRDNLFDNQPVNEIGLQEKWYYFGQDGALLEQTDKQVL
  D39V            YYFGDIGEMVVGWQYLEIPGTGYRDNLFDNQPVNEIGLQEKWYYFGQDGALLEQTDKQVL
  Hungary19A-6    YYFGDIGEMVVGWQYLEIPGTGYRDNLFDNQPVNEIGLQEKWYYFGQDGALLEQTDKQVL
  EF3030          YYFGDIGEMVVGWQYLEIPGTGYRDNLFDNQPVNEIGLQEKWYYFGQDGALLEQTDKQVL
                  ************************************************************
  
  TIGR4           EAKTSENTGKVYGEQYPLSAEKRTYYFDNNYAVKTGWIYEEGHWYYLNKLGNFGDDSYNP
  D39             EAKTSENTGKVYGEQYPLSAEKRTYYFDNNYAVKTGWIYEDGNWYYLNKLGNFGDDSYNP
  D39V            EAKTSENTGKVYGEQYPLSAEKRTYYFDNNYAVKTGWIYEDGNWYYLNKLGNFGDDSYNP
  Hungary19A-6    EAKTSENTGKVYGEQYPLSAEKRTYYFDNNYAVKTGWIYEEGHWYYLNKLGNFGDDSYNP
  EF3030          EAKTSENTGKVYGEQYPLSAEKRTYYFDNNYAVKTGWIYEDGNWYYLNKLGNFGDDSYNP
                  ****************************************:*:*****************
  
  TIGR4           LPIGEVAKGWTQDFHVTIDIDRSKPAPWYYLDA-SGKMLTDWQKVNGKWYYFGSSGSMAT
  D39             LPIGEVAKGWTQDFHVTIDIDRSKPAPWYYLDA-SGKMLTDWQKVNGKWYYFGSSGSMAT
  D39V            LPIGEVAKGWTQDFHVTIDIDRSKPAPWYYLDA-SGKMLTDWQKVNGKWYYFGSSGSMAT
  Hungary19A-6    LPIGEVAKGWTQDFHVTIDIDRSKPAPWYYLDPTTGIMQTGWQYLGNKWYYLRSSGAMAT
  EF3030          LPIGEVAKGWTQDFHVTIDIDRSKPAPWYYLDPETGIMRTGWQYLGNNWYYLRSSGAMAT
                  ********************************. :* * *.** :..:***: ***:***
  
  TIGR4           GWKYVRGKWYYLDNKNGDMKTGWQYLGNKWYYLRSSGAMVTGWYQDGSTWYYLDPSNGDM
  D39             GWKYVRGKWYYLDNKNGDMKTGWQYLGNKWYYLRSSGAMVTGWYQDGLTWYYLNAGNGDM
  D39V            GWKYVRGKWYYLDNKNGDMKTGWQYLGNKWYYLRSSGAMVTGWYQDGLTWYYLNAGNGDM
  Hungary19A-6    GWYQEGTTWYYLDHPNGDMKTGWQNLGNKWYYLRSSGAMATGWYQDGSTWYYLNAGNGDM
  EF3030          GWKYVRGKWYYLDNKNGDMK--------------------TGWYQDGSTWYYLDPSNGDM
                  **     .*****: *****                    ******* *****:..****
  
  TIGR4           KIGWTKVNGKWYYLNSNGAMVTGSQTIDGKVYNFASSGEWI-
  D39             KTGWFQVNGKWYYAYSSGALAVNT-TVDGYSVNY--NGEWVQ
  D39V            KTGWFQVNGKWYYAYSSGALAVNT-TVDGYSVNY--NGEWVQ
  Hungary19A-6    KTGWFQVNGNWYYAYSSGALAVNT-TVDGYSVNY--NGEWVR
  EF3030          KIGWTKVNGKWYYLNSNGAMVTGSQTIDGKVYNFASSGEWI-
                  * ** :***:***  *.**:...: *:**   *:  .***: