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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 16-DEC-2024
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae CGSP14
- locus tag: SPCG_RS01950 [old locus tag: SPCG_0373 ]
- pan locus tag?: PNEUPAN001212000
- symbol: cbpJ
- pan gene symbol?: cbpF
- synonym: cbpC
- product: choline-binding protein CbpJ
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPCG_RS01950 [old locus tag: SPCG_0373 ]
- symbol: cbpJ
- product: choline-binding protein CbpJ
- replicon: chromosome
- strand: +
- coordinates: 372350..373348
- length: 999
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_010582 (372350..373348) NCBI
- BioCyc: SPCG_RS01950 BioCyc
- MicrobesOnline: see SPCG_0373
- PneumoBrowse for strain D39V: SPV_0345 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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961ATGAAGCTTTTGAAAAAAATGATGCCAATCGCATTAGCAGTCTTTTTCTTTGGTTTGCTA
GGGACCAGTACAGTATTTGCAGATGATTCTGAAGGATGGCAGTTTGTCCAAGAAAACGGA
AGAACCTACTACAAAAAGGGGGACCTCAAAGAAACCTACTGGCGAGTGATTGATGGTAAG
TACTATTATTTTGATTCTCTATCTGGAGAGATGGTTGTCGGCTGGCAATATATCCCGTTT
CCATCTAAAGGTAGTACAATTGGTCCTTACCCAAATGGTATCAGATTAGAAGGTTTTCCA
AAGTCAGAGTGGTACTACTTCGATAAAAATGGAGTGCTACAAGAGTTTGTTGGTTGGAAA
ACATTAGAGATTAAAACTAAAGACAGTGTTGGAAGAAAGTACGGGGAAAAACGTGAAGAT
TCAGAAGATAAAGAAGAGAAGCGTTATTATACGAACTATTACTTTAATCAAAATCATTCT
TTAGAGACAGGTTGGCTTTATGATCAGTCTAACTGGTATTATCTAGCTAAGACGGAAATT
AATGGAGAAAACTACCTTGGTGGTGAAAGACGTGCGGGGTGGATAAACGATGATTCGACT
TGGTACTATTTAGATCCAACAACTGGTATTATGCAAACAGGATGGCAATATCTAGGTAAT
AACTGGTACTACCTCCGTTCATCAGGAGCAATGGCCACTGGCTGGTATCAGGAAGGTACC
ACTTGGTATTATTTAGACCAGCCAAATGGTGATATGAAAACAGGATGGCAATACCTTGGT
AACAAGTGGTACTACCTCCGTTCATCAGGAGCAATGGTAACTGGCTGGTATCAAGATGGT
TTAACTTGGTACTACCTAAATGCAGGTAATGGAGACATGAAGACAGGTTGGTTCCAGGTC
AATGGCAAATGGTACTATGCTTATAGCTCAGGTGCTTTGGCGGTGAATACGACCGTAGAT
GGCTACTACGTCAACTATAATGGCGAATGGGTTCGGTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPCG_RS01950 [old locus tag: SPCG_0373 ]
- symbol: CbpJ
- description: choline-binding protein CbpJ
- length: 332
- theoretical pI: 5.06612
- theoretical MW: 39113.2
- GRAVY: -0.747892
⊟Function[edit | edit source]
- TIGRFAM: glucan-binding repeat (TIGR04035; HMM-score: 21.8)
- TheSEED: see SPCG_0373
- PFAM: Choline_binding (CL0694) Choline_bind_3; Choline-binding repeat (PF19127; HMM-score: 110.3)Choline_bind_1; Putative cell wall binding repeat (PF01473; HMM-score: 107.7)and 1 moreCholine_bind_2; Choline-binding repeat (PF19085; HMM-score: 23.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Extracellular
- Cytoplasmic Score: 0.24
- Cytoplasmic Membrane Score: 0.05
- Cellwall Score: 0.8
- Extracellular Score: 8.91
- Internal Helix: 1
- DeepLocPro: Extracellular
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0.0032
- Cell wall & surface Score: 0.2632
- Extracellular Score: 0.7336
- SignalP: Signal peptide SP(Sec/SPI) length 27 aa
- SP(Sec/SPI): 0.998482
- TAT(Tat/SPI): 0.000478
- LIPO(Sec/SPII): 0.000663
- Cleavage Site: CS pos: 27-28. VFA-DD. Pr: 0.9944
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000771053 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MKLLKKMMPIALAVFFFGLLGTSTVFADDSEGWQFVQENGRTYYKKGDLKETYWRVIDGKYYYFDSLSGEMVVGWQYIPFPSKGSTIGPYPNGIRLEGFPKSEWYYFDKNGVLQEFVGWKTLEIKTKDSVGRKYGEKREDSEDKEEKRYYTNYYFNQNHSLETGWLYDQSNWYYLAKTEINGENYLGGERRAGWINDDSTWYYLDPTTGIMQTGWQYLGNNWYYLRSSGAMATGWYQEGTTWYYLDQPNGDMKTGWQYLGNKWYYLRSSGAMVTGWYQDGLTWYYLNAGNGDMKTGWFQVNGKWYYAYSSGALAVNTTVDGYYVNYNGEWVR
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: SPCG_RS01930 > mapZ > gndA > SPCG_RS01945 > cbpJ
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0345 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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