PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BM6001

serotype 19F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7465

serotype 1

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

⊟Summary

• pan ID^?: PNEUPAN001963000
• symbol^?: lytB
• synonym:
• description^?: endo-beta-N-acetylglucosaminidase

  descriptions from strain specific annotations:

  • endo-beta-N-acetylglucosaminidase
  • glucosaminidase domain-containing protein
  • putative endo-beta-N-acetylglucosaminidase
  • endo-beta-N-acetylglucosaminidase LytB
  • mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
  • 1, 4-beta-N-acetylmuramidase domain protein
  • endo-beta-N-acetylglucosaminidase precursor, putative
  • N-acetylmuramoyl-L-alanine amidase
  • pseudogene
• strand^?: +
• coordinates^?: 2427852..2431519
• occurrence^?: in 100% of 43 strains

⊟Orthologs

TIGR4:
SP_RS04785
D39:
SPD_RS04590 (lytB)
D39V:
SPV_RS04580 (lytB)
Hungary19A-6:
SPH_RS05160 (lytB)
EF3030:
EF3030_RS04645 (lytB)
670-6B:
SP670_RS06710 (lytB)
6A-10:
HKM25_RS04570 (lytB)
70585:
SP70585_RS04995 (lytB)
A026:
T308_RS05880 (lytB)
A66:
A66_RS04390
AP200:
SPAP_RS04955
ASP0581:
EL334_RS04820
ATCC 49619:
EL263_RS04780
ATCC 700669:
SPN23F_RS04535
BM6001:
ODS73_RS04960 (lytB)
BVJ1JL:
JN057_RS04625
CGSP14:
SPCG_RS04895
G54:
SPG_RS04480 (lytB)
gamPNI0373:
HMPREF1038_RS04850
HU-OH:
EL271_RS04510
Hu15:
SPNHU15_RS04710 (lytB)
Hu17:
SPNHU17_RS04640 (lytB)
INV104:
INV104_RS04845
INV200:
SPNINV200_RS04745 (lytB)
JJA:
SPJ_RS04535
MDRSPN001:
MDRSPN_RS05430 (lytB)
NCTC7465:
AT689_RS08995 (lytB)
NCTC7466:
DQM66_RS04590 (lytB)
NU83127:
EL277_RS04860
OXC141:
SPNOXC_RS04705
P1031:
SPP_RS04795 (lytB)
R6:
SPR_RS04350 (lytB)
SP49:
BMJ42_RS05360 (lytB)
SPN032672:
SPN032672_RS11105
SPN034156:
SPN034156_RS10600
SPN034183:
SPN034183_RS04720
SPN994038:
SPN994038_RS04630
SPN994039:
SPN994039_RS04635
SPNA45:
SPNA45_RS07140
ST556:
MYY_RS06350 (lytB)
Taiwan19F-14:
SPT_RS06140 (lytB)
TCH8431/19A:
HMPREF0837_RS07295 (lytB)
Xen35:
CXP32_RS04820

⊟Genome Viewer

TIGR4
D39
D39V
Hungary19A-6
EF3030

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
  
  
  TIGR4           MNLGEFWYNKINKNRGRRLMKKVRFIFLALLFFLASPEGAMASDGTWQGKQYLKEDGSQA
  D39             MNLGEFWYNKINKNRGRRLMKKVRFIFLALLFFLASPEGAMASDGTWQGKQYLKEDGSQA
  D39V            MNLGEFWYNKINKNRGRRLMKKVRFIFLALLFFLASPEGAMASDGTWQGKQYLKEDGSQA
  Hungary19A-6    MNLGEFWYNKINKNRGRRLMKKVRFIFLALLFFLASPEGAMASDGTWQGKQYLKEDGSQA
  EF3030          MNLGEFWYNKINKNRGRRLMKKVRFIFLALLFFLASPEGAMASDGTWQGKQYLKEDGSQA
                  ************************************************************
  
  TIGR4           ANEWVFDTHYQSWFYIKADANYAENEWLKQGDDYFYLKSGGYMAKSEWVEDKGAFYYLDQ
  D39             ANEWVFDTHYQSWFYIKADANYAENEWLKQGDDYFYLKSGGYMAKSEWVEDKGAFYYLDQ
  D39V            ANEWVFDTHYQSWFYIKADANYAENEWLKQGDDYFYLKSGGYMAKSEWVEDKGAFYYLDQ
  Hungary19A-6    ANEWIFDTHYQSWFYIKADANYAENEWLKQGDDYFYLKSGGYMAKSEWVEDKGAFYYLDQ
  EF3030          ANEWVFDTHYQSWFYIKADANYAENEWLKQGDDYFYLKSGGYMAKSEWVEDKGAFYYLDQ
                  ****:*******************************************************
  
  TIGR4           DGKMKRNAWVGTSYVGATGAKVIEDWVYDSQYDAWFYIKADGQHAEKEWLQIKGKDYYFK
  D39             DGKMKRNAWVGTSYVGATGAKVIEDWVYDSQYDAWFYIKADGQHAEKEWLQIKGKDYYFK
  D39V            DGKMKRNAWVGTSYVGATGAKVIEDWVYDSQYDAWFYIKADGQHAEKEWLQIKGKDYYFK
  Hungary19A-6    DGKMKRNAWVGTSYVGATGAKVIEDWIYDSQYDAWFYIKADGQHAEKEWLQIKGKDYYFK
  EF3030          DGKMKRNAWVGTSYVGATGAKVIEDWVYDSQYDAWFYIKADGQHAEKEWLQIKGKDYYFK
                  **************************:*********************************
  
  TIGR4           SGGYLLTSQWINQAYVNASGAKVQQGWLFDKQYQSWFYIKENGNYADKEWIFENGHYYYL
  D39             SGGYLLTSQWINQAYVNASGAKVQQGWLFDKQYQSWFYIKENGNYADKEWIFENGHYYYL
  D39V            SGGYLLTSQWINQAYVNASGAKVQQGWLFDKQYQSWFYIKENGNYADKEWIFENGHYYYL
  Hungary19A-6    SGGYLLTSQWINQAYVNASGAKVQQGWLFDKQYQSWFYIKENGNYADKEWIFENGHYYYL
  EF3030          SGGYLLTSQWINQAYVNASGAKVQQGWLFDKQYQSWFYIKENGNYADKEWIFENGHYYYL
                  ************************************************************
  
  TIGR4           --------------------------------------------KSGGYMAANEWIWDKE
  D39             KSGGYMAANEWIWDKESWFYLKFDGKIAEKEWVYDSHSQAWYYFKSGGYMAANEWIWDKE
  D39V            KSGGYMAANEWIWDKESWFYLKFDGKIAEKEWVYDSHSQAWYYFKSGGYMAANEWIWDKE
  Hungary19A-6    KSGGYMAANEWIWDKESWFYLKFDGKIAEKEWVYDSHSQAWYYFKSGGYMAANEWIWDKE
  EF3030          KSGGYMAANEWIWDKESWFYLKFDGKMAEKEWVYDSHSQAWYYFKSGGYMTANEWIWDKE
                                                              ******:*********
  
  TIGR4           SWFYLKFDGKMAEKEWVYDSHSQAWYYFKSGGYMTANEWIWDKESWFYLKSDGKIAEKEW
  D39             SWFYLKFDGKMAEKEWVYDSHSQAWYYFKSGGYMTANEWIWDKESWFYLKSDGKIAEKEW
  D39V            SWFYLKFDGKMAEKEWVYDSHSQAWYYFKSGGYMTANEWIWDKESWFYLKSDGKIAEKEW
  Hungary19A-6    SWFYLKFDGKMAEKEWVYDSHSQAWYYFKSGGYMTANEWIWDKESWFYLKSDGKIAEKEW
  EF3030          SWFYLKSDGKIAEKEWVYDSHSQAWYYFKSGGYMTANEWIWDKESWFYLKSDGKIAEKEW
                  ****** ***:*************************************************
  
  TIGR4           VYDSHSQAWYYFKSGGYMTANEWIWDKESWFYLKSDGKIAEKEWVYDSHSQAWYYFKSGG
  D39             VYDSHSQAWYYFKSGGYMTANEWIWDKESWFYLKSDGKMAEKEWVYDSHSQAWYYFKSGG
  D39V            VYDSHSQAWYYFKSGGYMTANEWIWDKESWFYLKSDGKMAEKEWVYDSHSQAWYYFKSGG
  Hungary19A-6    VYDSHSQAWYYFKSGGYMTANEWIWDKESWFYLKSDGKMAEKEWVYDSHSQAWYYFKSGG
  EF3030          VYDSHSQAWYYFKSGGYMTANEWIWDKESWFYLKSDGKMAEKEWVYDSHSQAWYYFKSGG
                  **************************************:*********************
  
  TIGR4           YMAKNETVDGYQLGSDGKWLGGKTTNENAAYYQVVPVTANVYDSDGEKLSYISQGSVVWL
  D39             YMAKNETVDGYQLGSDGKWLGGKATNKNAAYYQVVPVTANVYDSDGEKLSYISQGSVVWL
  D39V            YMAKNETVDGYQLGSDGKWLGGKATNKNAAYYQVVPVTANVYDSDGEKLSYISQGSVVWL
  Hungary19A-6    YMAKNETVDGYQLGSDGKWLGGKATNKNAAYYQVVPVTANVYDSDGEKLSYISQGSVVWL
  EF3030          YMAKNETVDGYQLGSDGKWLGGKTTNENAAYYQVVPVTANVYDSDGEKLSYISQGSVVWL
                  ***********************:**:*********************************
  
  TIGR4           DKDRKSDDKRLAITISGLSGYMKTEDLQALDASKDFIPYYESDGHRFYHYVAQNASIPVA
  D39             DKDRKSDDKRLAITISGLSGYMKTEDLQALDASKDFIPYYESDGHRFYHYVAQNASIPVA
  D39V            DKDRKSDDKRLAITISGLSGYMKTEDLQALDASKDFIPYYESDGHRFYHYVAQNASIPVA
  Hungary19A-6    DKDRKSDDKRLAITISGLSGYMKTEDLQALDASKDFIPYYESDGHRFYHYVAQNASIPVA
  EF3030          DKDRKSDDKRLAITISGLSGYMKTEDLQALDASKDFIPYYESDGHRFYHYVAQNASIPVA
                  ************************************************************
  
  TIGR4           SHLSDMEVGKKYYSADGLHFDGFKLENPFLFKDLTEATNYSAEELDKVFSLLNINNSLLE
  D39             SHLSDMEVGKKYYSADGLHFDGFKLENPFLFKDLTEATNYSAEELDKVFSLLNINNSLLE
  D39V            SHLSDMEVGKKYYSADGLHFDGFKLENPFLFKDLTEATNYSAEELDKVFSLLNINNSLLE
  Hungary19A-6    SHLSDMEVGKKYYSADGLYFDGFKLENPFLFKDLTEATNYSAEELDKVFSLLNINNSLLE
  EF3030          SHLSDMEVGKKYYSADGLHFDGFKLENPFLFKDLTEATNYSAEELDKVFSLLNINNSLLE
                  ******************:*****************************************
  
  TIGR4           NKGATFKEAEEHYHINALYLLAHSALESNWGRSKIAKDKNNFFGITAYDTTPYLSAKTFD
  D39             NKGATFKEAEEHYHINALYLLAHSALESNWGRSKIAKDKNNFFGITAYDTTPYLSAKTFD
  D39V            NKGATFKEAEEHYHINALYLLAHSALESNWGRSKIAKDKNNFFGITAYDTTPYLSAKTFD
  Hungary19A-6    NKGATFKEAEEHYHINALYLLAHSALESNWGRSKIAKDKNNFFGITAYDTTPYLSAKTFD
  EF3030          NKGATFKEAEEHYHINALYLLAHSALESNWGRSKIAKDKNNFFGITAYDTTPYLSAKTFD
                  ************************************************************
  
  TIGR4           DVDKGILGATKWIKENYIDRGRTFLGNKASGMNVEYASDPYWGEKIASVMMKINEKLGGK
  D39             DVDKGILGATKWIKENYIDRGRTFLGNKASGMNVEYASDPYWGEKIASVMMKINEKLGGK
  D39V            DVDKGILGATKWIKENYIDRGRTFLGNKASGMNVEYASDPYWGEKIASVMMKINEKLGGK
  Hungary19A-6    DVDKGILGATKWIKENYIDRGRTFLGNKASGMNVEYASDPYWGEKIASVMMKINEKLGGK
  EF3030          DVDKGILGATKWIKENYIDRGRTFLGNKASGMNVEYASDPYWGEKIASVMMKINEKLGGK
                  ************************************************************
  
  TIGR4           D
  D39             D
  D39V            D
  Hungary19A-6    D
  EF3030          D
                  *