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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN003075000
- symbol?: ileS
- synonym:
- description?: isoleucine--tRNA ligase
- isoleucine--tRNA ligase
- isoleucyl-tRNA synthetase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 3986716..3989241
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
(12F)
ASP0581:
EL334_RS08465 (ileS)
(19F)
ATCC 49619:
EL263_RS08020 (ileS)
(23F)
ATCC 700669:
SPN23F_RS08365 (ileS)
(14)
INV200:
SPNINV200_RS07900 (ileS)
(14)
JJA:
SPJ_RS07705 (ileS)
(19F)
MDRSPN001:
MDRSPN_RS02845 (ileS)
(19A)
SP49:
BMJ42_RS08790 (ileS)
(1)
SPN032672:
SPN032672_RS03010 (ileS)
(3)
SPN034156:
SPN034156_RS02955 (ileS)
(3)
SPN034183:
SPN034183_RS07915 (ileS)
(3)
SPN994038:
SPN994038_RS07815 (ileS)
(3)
SPN994039:
SPN994039_RS07820 (ileS)
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MKLKDTLNLGKTEFPMRAGLPTKEPVWQKEWEDAKLYQRRQELNQGKPHFTLHDGPPYAN
D39 MKLKDTLNLGKTEFPMRAGLPTKEPVWQKEWEYAKLYQRRQELNQGKPHFTLHDGPPYAN
D39V MKLKDTLNLGKTEFPMRAGLPTKEPVWQKEWEYAKLYQRRQELNQGKPHFTLHDGPPYAN
Hungary19A-6 MKLKDTLNLGKTEFPMRAGLPTKEPVWQKEWEDAKLYQRRQELNQGKPHFTLHDGPPYAN
EF3030 MKLKDTLNLGKTAFPMRAGLPTKEPVWQKEWEDAKLYQRRQELNEGKPHFVLHDGPPYAN
************ ******************* ***********:*****.*********
TIGR4 GNIHVGHAMNKISKDIIVRSKSMSGFYAPFIPGWDTHGLPIEQVLSKQGVKRKEMDLVEY
D39 GNIHVGHAMNKISKDIIVRSKSMSGFYAPFIPGWDTHGLPIEQVLSKQGVKRKEMDLVEY
D39V GNIHVGHAMNKISKDIIVRSKSMSGFYAPFIPGWDTHGLPIEQVLSKQGVKRKEMDLVEY
Hungary19A-6 GNIHVGHAMNKISKDIIVRSKSMSGFYAPFIPGWDTHGLPIEQVLSKQGVKRKEMDLVEY
EF3030 GNIHVGHAMNHISKDIIIRSKSMSGFNAPYIPGWDTHGLPIEQVLAKQGVKRKEMDLVEY
**********:******:******** **:***************:**************
TIGR4 LKLCREYALSQVDKQREDFKRLGVSGDWENPYVTLTPDYEAAQIRVFGEMANKGYIYRGA
D39 LKLCREYALSQVDKQREDFKRLGVSGDWENPYVTLTPDYEAAQIRVFGEMANKGYIYRGA
D39V LKLCREYALSQVDKQREDFKRLGVSGDWENPYVTLTPDYEAAQIRVFGEMANKGYIYRGA
Hungary19A-6 LKLCREYALSQVDKQREDFKRLGVSGDWENPYVTLTPDYEAAQIRVFGEMANKGYIYRGA
EF3030 LKLCREYALSQVYKQRDDFKRLGMSGDWENLYVTLTPDYEAAQIRVFGEMANKGYIYRGA
************ ***:******:****** *****************************
TIGR4 KPVYWSWSSESALAEAEIEYHDLVSTSLYYANKVKDGKGVLDTDTYIVVWTTTPFTITAS
D39 KPVYWSWSSESALAEAEIEYHDLVSTSLYYANKVKDGKGVLDTDTYIVVWTTTPFTITAS
D39V KPVYWSWSSESALAEAEIEYHDLVSTSLYYANKVKDGKGVLDTDTYIVVWTTTPFTITAS
Hungary19A-6 KPVYWSWSSESALAEAEIEYHDLVSTSLYYANKVKDGKGVLDTDTYIVVWTTTPFTITAS
EF3030 KPVYWSWSSESALAEAEIEYHDLVSTSLYYANKVKDGKGILDTDTYIVVWTTTPFTITAS
***************************************:********************
TIGR4 RGLTVGADIDYVLVQPAGEARKFVVAAELLTSLSEKFGWADVQVLETYRGQELNHIVTEH
D39 RGLTVGADIDYVLVQPAGEARKFVVAAELLTSLSEKFGWADVQVLETYRGQELNHIVTEH
D39V RGLTVGADIDYVLVQPAGEARKFVVAAELLTSLSEKFGWADVQVLETYRGQELNHIVTEH
Hungary19A-6 RGLTVGADIDYVLVQPAGEARKFVVAAELLTSLSEKFGWADVQVLETYRGQELNHIVTEH
EF3030 RGLTVGADIDYVLVQPASETRKFVVAAELLTSLSEKFGWADVQVLATYRGQELNHIVTEH
*****************.*:************************* **************
TIGR4 PWDTAVEELVILGDHVTTDSGTGIVHTAPGFGEDDYNVGIANNLEVAVTVDERGIMMKNA
D39 PWDTAVEELVILGDHVTTDSGTGIVHTAPGFGEDDYNVGIANNLEVAVTVDERGIMMKNA
D39V PWDTAVEELVILGDHVTTDSGTGIVHTAPGFGEDDYNVGIANNLEVAVTVDERGIMMKNA
Hungary19A-6 PWDTAVEELVILGDHVTTDSGTGIVHTAPGFGEDDYNVGIANNLEVAVTVDERGIMMKNA
EF3030 PWDTAVDELVILGDHVTTDSGTGIVHTAPGFGEDDYNVGIANGLEVAVTVDERGIMMANA
******:***********************************.************** **
TIGR4 GPEFEGQFYEKVVPTVIEKLGNLLLAQEEISHSYPFDWRTKKPIIWRAVPQWFASVSKFR
D39 GPEFEGQFYEKVVPTVIEKLGNLLLAQEEISHSYPFDWRTKKPIIWRAVPQWFASVSKFR
D39V GPEFEGQFYEKVVPTVIEKLGNLLLAQEEISHSYPFDWRTKKPIIWRAVPQWFASVSKFR
Hungary19A-6 GPEFEGQFYEKVVPTVIEKLGNLLLAQEEISHSYPFDWRTKKPIIWRAVPQWFASVSKFR
EF3030 GPEFEGQFYDKVVPTVIEKLGNLLLAQEEISHSYPFDWRTKKPIIWRAVPQWFASVSKFR
*********:**************************************************
TIGR4 QEILDEIEKVKFHSEWGKVRLYNMIRDRGDWVISRQRAWGVPLPIFYAEDGTAIMVAETI
D39 QEILDEIEKVKFHSEWGKVRLYNMIRDRGDWVISRQRAWGVPLPIFYAEDGTAIMVAETI
D39V QEILDEIEKVKFHSEWGKVRLYNMIRDRGDWVISRQRAWGVPLPIFYAEDGTAIMVAETI
Hungary19A-6 QEILDEIEKVKFHSEWGKVRLYNMIRDRGDWVISRQRAWGVPLPIFYAEDGTAIMVAETI
EF3030 QEILDAIDKVKFHTEWGKVRLYNMIRDRGDWVISRQRAWGVPLPIFYAEDGTAIMTAETI
***** *:*****:*****************************************.****
TIGR4 EHVAQLFEEYGSSIWWERDAKDLLPEGFTHPGSPNGEFKKETDIMDVWFDSGSSWNGVVV
D39 EHVAQLFEEHGSSIWWERDAKDLLPEGFTHPGSPNGEFKKETDIMDVWFDSGSSWNGVVV
D39V EHVAQLFEEHGSSIWWERDAKDLLPEGFTHPGSPNGEFKKETDIMDVWFDSGSSWNGVVV
Hungary19A-6 EHVAQLFEEHGSSIWWERDAKDLLPEEFTHPGSPNGEFKKETDIMDVWFDSGSSWNGVVV
EF3030 EHVAQLFEVHGSSIWWERDAKDLLPEGFTHPGSPNGEFKKETDIMDVWFDSGSSWNGVLV
******** :**************** *******************************:*
TIGR4 NRPELTYPADLYLEGSDQYRGWFNSSLITSVANHGVAPYKQILSQGFALDGKGEKMSKSL
D39 NRPELTYPADLYLEGSDQYRGWFNSSLITSVANHGVAPYKQILSQGFALDGKGEKMSKSL
D39V NRPELTYPADLYLEGSDQYRGWFNSSLITSVANHGVAPYKQILSQGFALDGKGEKMSKSL
Hungary19A-6 NRPELTYPADLYLEGSDQYRGWFNSSLITSVANHGVAPYKQILSQGFALDGKGEKMSKSL
EF3030 NRPNLTYPADLYLEGSDQYRGWFNSSLITSVANHGVAPYKQILSQGFTLDGKGEKMSKSL
***:*******************************************:************
TIGR4 GNTIAPSDVEKQFGAEILRLWVTSVDSSNDVRISMDILSQVSETYRKIRNTLRFLIANTS
D39 GNTIAPSDVEKQFGAEILRLWVTSVDSSNDVRISMDILSQVSETYRKIRNTLRFLIANTS
D39V GNTIAPSDVEKQFGAEILRLWVTSVDSSNDVRISMDILSQVSETYRKIRNTLRFLIANTS
Hungary19A-6 GNTIAPSDVEKQFGAEILRLWVTSVDSSNDVRISMDILSQVSETYRKIRNTLRFLIANTS
EF3030 GNTIAPSDVEKQFGAEILRLWVTSVDSSNDVRISMDILSQVSETYRKIRNTLRFLIANTS
************************************************************
TIGR4 DFNPAQDTVAYDELRSVDKYMTIRFNQLVKTIRDAYADFEFLTIYKALVNFINVDLSAFY
D39 DFNPAQDTVAYDELRSVDKYMTIRFNQLVKTIRDAYADFEFLTIYKALVNFINVDLSAFY
D39V DFNPAQDTVAYDELRSVDKYMTIRFNQLVKTIRDAYADFEFLTIYKALVNFINVDLSAFY
Hungary19A-6 DFNPAQDTVAYDELRSVDKYMTIRFNQLVKTIRDAYADFEFLTIYKALVNFINVDLSAFY
EF3030 DFNPAQDVVAYDELRSVDKYMTIRFNQLVKTIRDAYADFEFLTIYKALVNFINVDLSAFY
*******.****************************************************
TIGR4 LDFAKDVVYIEGAKSLERRQMQTVFYDILVKITKLLTPILPHTAEEIWSYLEFETEDFVQ
D39 LDFAKDVVYIEGAKSLERRQMQTVFYDILVKITKLLTPILPHTAEEIWSYLEFETEDFVQ
D39V LDFAKDVVYIEGAKSLERRQMQTVFYDILVKITKLLTPILPHTAEEIWSYLEFETEDFVQ
Hungary19A-6 LDFAKDVVYIEGAKSLERRQMQTVFYDILVKITKLLTPILPHTAEEIWSYLEFEAEDFVQ
EF3030 LDFAKDVVYIEGAKSLERRQMQTVFYDILVKITKLLTPILPHTAEEIWSYLEFEAEDFVQ
******************************************************:*****
TIGR4 LSELPEVQTFANQEEILDTWAAFMDFRGQAQKALEEARNAKVIGKSLEAHLTVYPNEVVK
D39 LSELPEVQTFANQEEILDTWAAFMDFRGQAQKALEEARNAKVIGKSLEAHLTVYPNEVVK
D39V LSELPEVQTFANQEEILDTWAAFMDFRGQAQKALEEARNAKVIGKSLEAHLTVYPNEVVK
Hungary19A-6 LSELPEAQTSANQEEILDTWAAFMDFRGQAQKALEEARNAKVIGKSLEAHLTVYPNEVVK
EF3030 LSELPEAQTFANQEEVLDTWAAFMDFRGQAQKALEEARNAKVIGKSLEAHLTVYPNEVVK
******.** *****:********************************************
TIGR4 TLLEAVNSNVAQLLIVSELTIAEGPAPEAALSFEDVAFTVERATGEVCDRCRRIDPTTAE
D39 TLLEAVNSNVAQLLIVSELTIAEGPAPEAALSFEDVAFTVERATGEVCDRCRRIDPTTAE
D39V TLLEAVNSNVAQLLIVSELTIAEGPAPEAALSFEDVAFTVERATGEVCDRCRRIDPTTAE
Hungary19A-6 TLLEAVNSNVAQLLIVSDLTIAEGPAPEAALSFEDVAFTVERAAGEVCDRCRRIDPTTAE
EF3030 TLLEAVNSNVAQLLIVSDLTIAEGPAPEAAVSFEDVAFTVERAAGQVCDRCRRIDPTTAE
*****************:************:************:*:**************
TIGR4 RSYQAVICDHCASIVEENFAEAVAEGFEEK
D39 RSYQAVICDHCASIVEENFAEAVAEGFEEK
D39V RSYQAVICDHCASIVEENFAEAVAEGFEEK
Hungary19A-6 RSYQAVICDHCASIVEENFAEAVAEGFEEK
EF3030 RSYQAVICDHCASIVEENFAEAVAEGFEEK
******************************