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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 15-DEC-2024
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae 70585
- locus tag: SP70585_RS08105 [old locus tag: SP70585_1636 ]
- pan locus tag?: PNEUPAN002998000
- symbol: SP70585_RS08105
- pan gene symbol?: pdxU2
- synonym:
- product: ECF transporter S component
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SP70585_RS08105 [old locus tag: SP70585_1636 ]
- symbol: SP70585_RS08105
- product: ECF transporter S component
- replicon: chromosome
- strand: -
- coordinates: 1513624..1514085
- length: 462
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_012468 (1513624..1514085) NCBI
- BioCyc: SP70585_RS08105 BioCyc
- MicrobesOnline: see SP70585_1636
- PneumoBrowse for strain D39V: SPV_1422 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421ATGAAGCAAACAAAAACAACTAAAATTGCCCTTGTATCCCTATTAACCGCCCTTTCTGTG
GTTCTAGGTTATTTCTTAAAAATCCCAACACCTACAGGAATTCTAACTCTTTTAGATGCT
GGTGTCTTCTTTGCGGCCTTTTACTTTGGTAGTCGTGAAGGAGCGGTAGTCGGAGGACTA
GCAAGTTTCTTGCTTGACCTCTTATCAGGCTACCCTCAGTGGATGTTCTTTAGCTTGGTC
AACCATGGCTTGCAGGGATTTTTCGCAGGATTTAAAGGAAAAAGTCAGTGGTTAGGCCTT
ATTTTAGCAACTATTGCCATGGTAGGGGGCTACGCCTTGGGTTCTACTTTGATGAATGGC
TGGGCAGCAGCCCTCCCAGAAATTCTACCAAATTTTATGCAAAATATGGCAGGGATGATT
GTAGGATTTATTCTTAGTCAAAGTATCAAGAAGATTAAGTAA60
120
180
240
300
360
420
462
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SP70585_RS08105 [old locus tag: SP70585_1636 ]
- symbol: SP70585_RS08105
- description: ECF transporter S component
- length: 153
- theoretical pI: 10.365
- theoretical MW: 16377.5
- GRAVY: 0.791503
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Unknown substrate ECF transporter S component, folate family (TIGR04518; HMM-score: 29.7)Transport and binding proteins Unknown substrate putative energy coupling factor transporter S component (TIGR04522; HMM-score: 24)and 1 moreUnknown function General TIGR04002 family protein (TIGR04002; HMM-score: 18.5)
- TheSEED: see SP70585_1636
- PFAM: Gx_transp (CL0315) ECF-ribofla_trS; ECF-type riboflavin transporter, S component (PF07155; HMM-score: 114.3)and 2 moreECF_trnsprt; ECF transporter, substrate-specific component (PF12822; HMM-score: 39.1)no clan defined DUF4118; Domain of unknown function (DUF4118) (PF13493; HMM-score: 11.2)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 4
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0067
- Cytoplasmic Membrane Score: 0.9918
- Cell wall & surface Score: 0
- Extracellular Score: 0.0014
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.035675
- TAT(Tat/SPI): 0.000421
- LIPO(Sec/SPII): 0.012744
- predicted transmembrane helices (TMHMM): 4
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000814984 NCBI
- UniProt: see SP70585_1636
⊟Protein sequence[edit | edit source]
- MKQTKTTKIALVSLLTALSVVLGYFLKIPTPTGILTLLDAGVFFAAFYFGSREGAVVGGLASFLLDLLSGYPQWMFFSLVNHGLQGFFAGFKGKSQWLGLILATIAMVGGYALGSTLMNGWAAALPEILPNFMQNMAGMIVGFILSQSIKKIK
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1422 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]