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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 11-FEB-2025

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae SPN032672
  • locus tag: SPN032672_RS02710
  • pan locus tag?: PNEUPAN002998000
  • symbol: SPN032672_RS02710
  • pan gene symbol?: pdxU2
  • synonym:
  • product: ECF transporter S component

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPN032672_RS02710
  • symbol: SPN032672_RS02710
  • product: ECF transporter S component
  • replicon: chromosome
  • strand: -
  • coordinates: 518491..518952
  • length: 462
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_021003 (518491..518952) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_1422 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGAAGCAAACAAAAACAACTAAAATCGCCCTTGTATCCCTATTAACCGCCCTTTCTGTG
    GTTCTAGGTTATTTCTTAAAAATCCCAACACCTACAGGAATTCTAACTCTTTTAGATGCT
    GGTGTCTTCTTTGCGGCCTTTTACTTTGGTAGTCGTGAAGGAGCGGTAGTCGGAGGACTA
    GCAAGTTTCTTGATTGACCTCTTATCAGGCTACCCTCAGTGGATGTTCTTTAGCTTGGTC
    AACCATGGCTTGCAGGGATTTTTCGCAGGATTTAAAGGAAAAAGTCAGTGGTTAGGCCTT
    ATTTTAGCAACTATTGCCATGGTAGGAGGCTACGCCTTGGGTTCTACTTTGATGAATGGC
    TGGGCAGCAGCCCTCCCAGAAATTCTACCAAATTTCATGCAAAATATGGTAGGGATGATT
    GTAGGATTTATTCTTAGTCAAAGTATCAAGAAGATTAAGTAA
    60
    120
    180
    240
    300
    360
    420
    462

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPN032672_RS02710
  • symbol: SPN032672_RS02710
  • description: ECF transporter S component
  • length: 153
  • theoretical pI: 10.365
  • theoretical MW: 16405.5
  • GRAVY: 0.811765

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Unknown substrate ECF transporter S component, folate family (TIGR04518; HMM-score: 30.3)
    Metabolism Transport and binding proteins Unknown substrate putative energy coupling factor transporter S component (TIGR04522; HMM-score: 25.9)
    and 1 more
    Unknown function General TIGR04002 family protein (TIGR04002; HMM-score: 17.6)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    Gx_transp (CL0315) ECF-ribofla_trS; ECF-type riboflavin transporter, S component (PF07155; HMM-score: 115.7)
    and 4 more
    ECF_trnsprt; ECF transporter, substrate-specific component (PF12822; HMM-score: 38.4)
    no clan defined DUF5455; Family of unknown function (DUF5455) (PF17537; HMM-score: 13.5)
    DUF4118; Domain of unknown function (DUF4118) (PF13493; HMM-score: 10.5)
    LysE (CL0292) UPF0016; Uncharacterized protein family UPF0016 (PF01169; HMM-score: 9.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0038
    • Cytoplasmic Membrane Score: 0.9949
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0012
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.037797
    • TAT(Tat/SPI): 0.000437
    • LIPO(Sec/SPII): 0.012435
  • predicted transmembrane helices (TMHMM): 4

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000814982 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKQTKTTKIALVSLLTALSVVLGYFLKIPTPTGILTLLDAGVFFAAFYFGSREGAVVGGLASFLIDLLSGYPQWMFFSLVNHGLQGFFAGFKGKSQWLGLILATIAMVGGYALGSTLMNGWAAALPEILPNFMQNMVGMIVGFILSQSIKKIK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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