From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 25-OCT-2019

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae ATCC 49619
  • locus tag: SPAT_0964 [new locus tag: EL263_RS05155 ]
  • pan locus tag?: PNEUPAN002089000
  • symbol: SPAT_0964
  • pan gene symbol?: ccrB
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPAT_0964 [new locus tag: EL263_RS05155 ]
  • symbol: SPAT_0964
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 959259..960464
  • length: 1206
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    ATGGTGGCTTTGGCTCCGTATGGATATAAACTTGAAGACGGCAAGCTGTTTATAAATGAA
    GAAGAGGCAGTTGTAATAAGAACGATTTTCGACCAGTATGTAAATACTACGATAGGAGCC
    AATGGGATATCTAAATACTTAGAGAATCATGGAATTAGAAAAATCCCAAGACAGAATGGT
    AAGAATCCTTTGTTTGATGCAGGTCTTATAAGAAAGATATTAAAGAATCCTGTATATAAT
    GGGAAAATAGCATTTGGAAGAAGAACTTTAGAAAAAGTTCATGGTACAAGAAATGAATAT
    AAGCAGGTTGAACAAGATGAATATCTAATATCTGAAGGGATACATGAAGCTATAGTTTCC
    GATGAAGTTTGGCAAGCTGCTCAGGTTAAGCTAAAATCTCAAGCAAAGAAATATGAGCGT
    GTGAATAAAGGAAAAGATACACGCACACACTTGCTTTCTGGAATTGTAAAATGCCCGATA
    TGTGGAGTGGGAATGTTTGGGAACAAGTGTATCAAGAAAAAGAAAGATGGCACAAAGTAT
    AAAGATTTTTATTACTATGGTTGTAAACATAGGCAGATGATAAGAGGTCATGAGTGTACA
    TTCAGTAAGCAAATTAGAGAAGAATTGTTAGATGATGCTGTTGCAGAGGTGATTGTCAAG
    ATAGTAAGTAATCCGAAATTTGCTTCTATGATGCAAGAAAAAATCAACATGAAGGTGGAT
    ACCTCTGAAATAGAAAAAGAAATAGATAATTACCAAAAGGAATTGAGAAAGAGTCATTCT
    ACAAAGTTTAAGCTAATTGAGGAAATAGATAATTTAGATGTTGAAGATAAGCATTATAAG
    AGAAGGAAACAGGATTTAGATGATAGACTATGTCGTATGTATGACAAAATAGATGAATTA
    GAATCATCACTAATTGATGCGAAAGCAAAGAAACAGACTATTGAAGCTGAAAAGCTTACA
    GGAGATAACATATATAAGGTTCTGATCTATTTTGATAAGCTCTATAAAGTCATGAATGAT
    GTAGAGCATAGGCAGTTAATTTCAGCTTTGATTTCTGAAATTCAAGTTTATGAAGAAAAA
    CAATCTAACGGACAATGGCTAAAATCCATTACTTTTAAGCTACCAATTATAGAAGAAAAT
    CTCAACATAGGTTTGGACAATGATGAACAAGTTGAATGTGTAAGTTTATTAGAGAAACGT
    AGTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1206

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPAT_0964 [new locus tag: EL263_RS05155 ]
  • symbol: SPAT_0964
  • description: hypothetical protein
  • length: 401
  • theoretical pI: 8.56606
  • theoretical MW: 46592.3
  • GRAVY: -0.633666

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Cell division chromosome segregation protein SMC (TIGR02169; HMM-score: 16.4)
    Genetic information processing DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02169; HMM-score: 16.4)
    and 1 more
    SH3 domain protein (TIGR04211; HMM-score: 8.1)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    no clan defined Recombinase; Recombinase (PF07508; HMM-score: 71.9)
    and 9 more
    Zn_Beta_Ribbon (CL0167) Zn_ribbon_recom; Recombinase zinc beta ribbon domain (PF13408; HMM-score: 45.7)
    no clan defined CENP-F_leu_zip; Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 (PF10473; HMM-score: 15.1)
    Cnn_1N; Centrosomin N-terminal motif 1 (PF07989; HMM-score: 12.3)
    Cob_adeno_trans (CL0601) Cob_adeno_trans; Cobalamin adenosyltransferase (PF01923; HMM-score: 12.2)
    no clan defined DUF6730; Family of unknown function (DUF6730) (PF20503; HMM-score: 12)
    DUF1664; Protein of unknown function (DUF1664) (PF07889; HMM-score: 11.2)
    ERM_helical; Ezrin/radixin/moesin, alpha-helical domain (PF20492; HMM-score: 11.2)
    NUDIX (CL0261) MRP-L46; 39S mitochondrial ribosomal protein L46 (PF11788; HMM-score: 9.5)
    no clan defined CENP-H; Centromere protein H (CENP-H) (PF05837; HMM-score: 7.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9825
    • Cytoplasmic Membrane Score: 0.0011
    • Cell wall & surface Score: 0.0004
    • Extracellular Score: 0.016
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004502
    • TAT(Tat/SPI): 0.000215
    • LIPO(Sec/SPII): 0.000728
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: BBG39016 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MVALAPYGYKLEDGKLFINEEEAVVIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGKIAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYERVNKGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCKHRQMIRGHECTFSKQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTKFKLIEEIDNLDVEDKHYKRRKQDLDDRLCRMYDKIDELESSLIDAKAKKQTIEAEKLTGDNIYKVLIYFDKLYKVMNDVEHRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLNIGLDNDEQVECVSLLEKRS

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPAT_0964&oldid=52032"