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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 02-MAY-2018
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae D39
- locus tag: SPD_0844 [new locus tag: SPD_RS04540 ]
- pan locus tag?: PNEUPAN001972000
- symbol: celB
- pan gene symbol?: comEC
- synonym:
- product: competence protein CelB
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPD_0844 [new locus tag: SPD_RS04540 ]
- symbol: celB
- product: competence protein CelB
- replicon: chromosome
- strand: +
- coordinates: 858131..860371
- length: 2241
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP000410 (858131..860371) NCBI
- BioCyc: see SPD_RS04540
- MicrobesOnline: 2017755 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_0844 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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2221ATGTTACAGTGGATTAAGAATTTCTCTATTCCCCTAATTTACCTGAGTTTTCTATTACTT
TGGCTTTATTACGCTATTTTCTCAGCATCCTATCTTGCTTTGTTGGGCTTTGTTTTTCTG
CTAGTCTGTCTCTTTATCCAATTTCCGTGGAAATCTGCTGGTAAAGTTCTAATAATTTGC
GGAATCTTTGGATTTTGGTTTGTTTTTCAAAATTGGCAACAGAGTCAAGCGAGTCAAAAT
CTGGCGGATTCTGTTGAAAGGGTACGGATTCTGCCTGACACTGTTAAGGTCAATGGTGAT
AGTCTGTCCTTTCGCGGCAAGGCTGATGGACGCATTTTTCAAGTCTATTATAAACTCCAG
TCCGAGGAGGAGAAAGAAGCCTTTCAAGCTTTAACCGACCTGCATGAGATAGGACTAGAA
GGGAAGCTTTCGGAGCCAGAAGGGCAGAGAAATTTTGGTGGCTTTAATTACCAAGCCTAT
CTGAAGACTCAGGGAATTTACCAGACTCTCAATATCAAAAAAATCCAGTCACTTCAAAAG
ATTGGCAGTTGGGATATAGGAGAAAACTTGTCCAGTTTACGTCGAAAGGCTGTGGTTTGG
ATTAAGACGCACTTTCCAGACCCTATGCGCAATTACATGACAGGACTCTTGCTGGGACAT
CTGGACACCGACTTTGAGGAGATGAATGAGCTTTATTCCAGTCTAGGAATTATCCACCTC
TTTGCCCTATCTGGCATGCAGGTAGGTTTTTTCATGAATGGATTTAAGAAACTTCTCTTG
CGATTGGGCTTGACCCAAGAAAAGTTGAAATGGCTGACTTATCCCTTTTCCCTTATCTAT
GCGGGACTAACTGGATTTTCAGCATCGGTTATTCGCAGTCTCTTGCAAAAGCTACTGGCT
CAACATGGGGTTAAGGGCTTGGATAATTTTGCCTTGACGGTGCTTGTCCTCTTTATTGTC
ATGCCAAACTTTTTCTTTACAGCAGGAGGAGTCTTGTCCTGCGCTTATGCTTTTATCCTG
ACCATGACCAGCAAAGAAGGGGAGGGGCTCAAGGCTGTTGCTAGTGAAAGTCTAGTCATC
TCCTTGGGCATATTGCCCATTCTATCCTTCTATTTTGCGGAATTTCAACCTTGGTCTATC
CTTTTGACCTTTGTCTTTTCCTTTCTATTTGACTTGACCTTCTTACCGCTCTTGTCTATT
TTATTTGTCCTTTCCTTTCTCTATCCAGTCATTCAGCTGAACTTTATCTTTGAATGGTTG
GAGGGCATTATTCGCTTGGTGTCACAGGTGACAAGTAGACCTCTGGTCTTTGGACAACCC
AATACATGGCTTTTAATCCTATTGTTAATTTCTTTGGCTTTGGTCTATGATTTGAGGAAA
AACATTAAAAAGCTAACGGTATTGTGCTTATTGATTACAGGGCTCTTTCTCCTGACCAAG
CATCCACTGGAAAATGAAATCACCATGCTGGATGTGGGGCAAGGAGAAAGTATTTTCCTA
CGGGATGTAACTGGGAAAACCATTCTCATAGATGTAGGTGGTAAGGCAGAATCTTATAAG
AAAATCAAAAAATGGCAAGAAAAGATGACGACCAGCAATGCCCAGCGAAGCTTGATACCC
TATCTCAAAAGTCGAGGAGTAGCTAAGATTGACCAGCTAATTTTGACTAACACGGACAAG
GAGCATGTTGGAGATTTGTCAGAGATGACCAAGGCTTTCCATGTAGGGGAGATTCTAGTA
TCAAAAGACAGTCTGAAACAGAAGGAATTTGTGGCAGAACTACAGGCGACTCAAACAAAG
GTGCGTAGTATGATAGTAGGGGAGAACTTGCCCATTTTTGGAAGTCAGTTAGAAGTTCTA
TCTCCAAGGAAAATGGGAGATGGAGGACACGATGATACCCTAGTTCTGTATGGGAAATTC
TTGGATAAGCAATTTCTCTTCACGGGAAATTTGGAGGAGAAAGGAGAGAAGGACTTGCTG
AAGCACTATCCAGACTTGAAAGTAAATGTTTTGAAAGCTAGCCAACATGGCAATAAAAAA
TCATCAAGTCCAGCCTTTCTAGAAAAACTCAAACCAGAGCTTACTCTTATCTCAGTTGGA
AAGAGCAATCGAATGAAACTCCCCTATCAGGAAACATTGACACGACTGGAAGGTATCAAT
AGCAAAGTTTATCGAACTGACCAGCAAGGAGCTATACGTTTTAAGGGGTTGGATAGTTGG
AAAATCGAAAGTGTTCGATAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPD_0844 [new locus tag: SPD_RS04540 ]
- symbol: CelB
- description: competence protein CelB
- length: 746
- theoretical pI: 9.62165
- theoretical MW: 84618.6
- GRAVY: 0.175871
⊟Function[edit | edit source]
- TIGRFAM: Cellular processes DNA transformation DNA internalization-related competence protein ComEC/Rec2 (TIGR00361; HMM-score: 256.6)and 1 moreUnknown function General ComEC/Rec2-related protein (TIGR00360; HMM-score: 52.1)
- TheSEED :
- DNA internalization-related competence protein ComEC/Rec2
DNA Metabolism DNA uptake, competence Gram Positive Competence Late competence protein ComEC, DNA transportand 1 more - PFAM: no clan defined Competence; Competence protein (PF03772; HMM-score: 119.2)and 3 moreDUF4131; Domain of unknown function (DUF4131) (PF13567; HMM-score: 48.7)Metallo-HOrase (CL0381) Lactamase_B; Metallo-beta-lactamase superfamily (PF00753; HMM-score: 31.5)Peroxisome (CL0484) Pex24p; Integral peroxisomal membrane peroxin (PF06398; HMM-score: 6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 10
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.00178
- TAT(Tat/SPI): 0.000425
- LIPO(Sec/SPII): 0.071335
- predicted transmembrane helices (TMHMM): 9
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MLQWIKNFSIPLIYLSFLLLWLYYAIFSASYLALLGFVFLLVCLFIQFPWKSAGKVLIICGIFGFWFVFQNWQQSQASQNLADSVERVRILPDTVKVNGDSLSFRGKADGRIFQVYYKLQSEEEKEAFQALTDLHEIGLEGKLSEPEGQRNFGGFNYQAYLKTQGIYQTLNIKKIQSLQKIGSWDIGENLSSLRRKAVVWIKTHFPDPMRNYMTGLLLGHLDTDFEEMNELYSSLGIIHLFALSGMQVGFFMNGFKKLLLRLGLTQEKLKWLTYPFSLIYAGLTGFSASVIRSLLQKLLAQHGVKGLDNFALTVLVLFIVMPNFFFTAGGVLSCAYAFILTMTSKEGEGLKAVASESLVISLGILPILSFYFAEFQPWSILLTFVFSFLFDLTFLPLLSILFVLSFLYPVIQLNFIFEWLEGIIRLVSQVTSRPLVFGQPNTWLLILLLISLALVYDLRKNIKKLTVLCLLITGLFLLTKHPLENEITMLDVGQGESIFLRDVTGKTILIDVGGKAESYKKIKKWQEKMTTSNAQRSLIPYLKSRGVAKIDQLILTNTDKEHVGDLSEMTKAFHVGEILVSKDSLKQKEFVAELQATQTKVRSMIVGENLPIFGSQLEVLSPRKMGDGGHDDTLVLYGKFLDKQFLFTGNLEEKGEKDLLKHYPDLKVNVLKASQHGNKKSSSPAFLEKLKPELTLISVGKSNRMKLPYQETLTRLEGINSKVYRTDQQGAIRFKGLDSWKIESVR
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: SPD_0842 > celA > celB
⊟Regulation[edit | edit source]
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0844 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Jelle Slager, Rieza Aprianto, Jan-Willem Veening
Refining the Pneumococcal Competence Regulon by RNA Sequencing.
J Bacteriol: 2019, 201(13);
[PubMed:30885934] [WorldCat.org] [DOI] (I e)