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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 10-MAR-2021
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae Hungary19A-6
- locus tag: SPH_RS10215 [old locus tag: SPH_2089 ]
- pan locus tag?: PNEUPAN003521000
- symbol: recA
- pan gene symbol?: recA
- synonym:
- product: recombinase RecA
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPH_RS10215 [old locus tag: SPH_2089 ]
- symbol: recA
- product: recombinase RecA
- replicon: chromosome
- strand: -
- coordinates: 1923571..1924737
- length: 1167
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: NC_010380 (1923571..1924737) NCBI
- BioCyc: SPH_RS10215 BioCyc
- MicrobesOnline: see SPH_2089
- PneumoBrowse for strain D39V: SPV_1739 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1141ATGGCGAAAAAACCAAAAAAATTAGAAGAAATTTCAAAAAAATTTGGGGCAGAACGTGAA
AAGGCCTTGAATGACGCTCTTAAATTGATTGAGAAAGACTTTGGTAAAGGATCAATCATG
CGTTTGGGTGAACGTGCGGAGCAAAAGGTGCAAGTGATGAGCTCAGGTTCTTTAGCTCTT
GACATTGCCCTTGGCTCAGGTGGTTATCCTAAGGGACGTATCATCGAAATCTATGGCCCA
GAGTCATCTGGTAAGACAACGGTTGCCCTTCATGCAGTTGCACAAGCGCAAAAAGAAGGT
GGGATTGCTGCCTTTATCGATGCGGAACATGCCCTTGATCCAGCTTATGCTGCGGCCCTT
GGTGTCAATATTGACGAATTGCTCTTGTCTCAACCAGACTCAGGAGAGCAAGGTCTTGAG
ATTGCGGGAAAATTGATTGACTCAGGTGCAGTTGATCTTGTCGTAGTCGACTCAGTTGCT
GCCCTTGTTCCTCGTGCGGAAATTGATGGAGATATCGGAGATAGCCATGTTGGTTTGCAG
GCTCGTATGATGAGCCAGGCCATGCGTAAACTTGGCGCCTCTATCAATAAAACCAAAACA
ATTGCCATTTTTATCAACCAATTGCGTGAAAAAGTTGGAGTGATGTTTGGAAATCCAGAA
ACAACACCGGGCGGACGTGCTTTGAAATTCTATGCTTCAGTCCGCTTGGATGTTCGTGGT
AATACACAAATTAAGGGAACTGGTGATCAAAAAGAAACCAATGTCGGTAAAGAAACTAAG
ATTAAGGTTGTAAAAAATAAGGTAGCTCCACCGTTTAAGGAAGCCGTAGTTGAAATTATG
TACGGAGAAGGAATTTCTAAGACTGGTGAGCTTTTGAAGATTGCAAGCGATTTGGATATT
ATCAAAAAAGCAGGGGCTTGGTATTCTTACAAAGATGAAAAAATTGGGCAAGGTTCTGAG
AATGCTAAGAAATACTTGGCAGAGCACCCAGAAATCTTTGATGAAATTGATAAGCAAGTC
CGTTCTAAATTTGGCTTGATTGATGGAGAAGAAGTTTCAGAACAAGATACTGAAAACAAA
AAAGATGAGCCAAAGAAAGAAGAAGCAGTGAATGAAGAAGTTCCGCTTGACTTAGGCGAT
GAACTTGAAATCGAAATTGAAGAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPH_RS10215 [old locus tag: SPH_2089 ]
- symbol: RecA
- description: recombinase RecA
- length: 388
- theoretical pI: 4.84048
- theoretical MW: 41949.5
- GRAVY: -0.389175
⊟Function[edit | edit source]
- TIGRFAM: DNA metabolism DNA replication, recombination, and repair protein RecA (TIGR02012; HMM-score: 534.8)and 7 moreDNA repair and recombination protein RadB (TIGR02237; HMM-score: 54.4)DNA metabolism DNA replication, recombination, and repair DNA repair and recombination protein RadA (TIGR02236; HMM-score: 37.6)DNA repair protein RAD51 (TIGR02239; HMM-score: 34.8)meiotic recombinase Dmc1 (TIGR02238; HMM-score: 34.2)DNA metabolism DNA replication, recombination, and repair DNA repair protein RadA (TIGR00416; HMM-score: 23.8)KaiC domain protein, PAE1156 family (TIGR03881; HMM-score: 18.2)KaiC domain protein, AF_0351 family (TIGR03880; HMM-score: 15.2)
- TheSEED: see SPH_2089
- PFAM: P-loop_NTPase (CL0023) RecA; recA bacterial DNA recombination protein (PF00154; HMM-score: 465.3)and 7 moreRad51; Rad51 (PF08423; HMM-score: 39.7)ATPase; KaiC (PF06745; HMM-score: 28.3)ATPase_2; ATPase domain predominantly from Archaea (PF01637; HMM-score: 21.1)AAA_24; AAA domain (PF13479; HMM-score: 18.6)AAA_16; AAA ATPase domain (PF13191; HMM-score: 17.4)AAA; ATPase family associated with various cellular activities (AAA) (PF00004; HMM-score: 15)AAA_25; AAA domain (PF13481; HMM-score: 14.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.97
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.01
- Extracellular Score: 0.02
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.023194
- TAT(Tat/SPI): 0.006544
- LIPO(Sec/SPII): 0.00085
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MAKKPKKLEEISKKFGAEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSENAKKYLAEHPEIFDEIDKQVRSKFGLIDGEEVSEQDTENKKDEPKKEEAVNEEVPLDLGDELEIEIEE
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1739 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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