From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae JJA
  • locus tag: SPJ_2192 [new locus tag: SPJ_RS10865 ]
  • pan locus tag?: PNEUPAN003837000
  • symbol: SPJ_2192
  • pan gene symbol?: fucA
  • synonym:
  • product: L-fuculose phosphate aldolase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPJ_2192 [new locus tag: SPJ_RS10865 ]
  • symbol: SPJ_2192
  • product: L-fuculose phosphate aldolase
  • replicon: chromosome
  • strand: -
  • coordinates: 2043788..2044426
  • length: 639
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    ATGTCAGATGTAAAACAAGAATTAATTAAGTATGGCAAGAAGCTAGTAGAAACAGATTTG
    ACGAAAGGAACAGGTGGGAATCTCAGTGTTTTCGATCGTGAAAAACAATTGATGGCAATT
    ACCCCGTCGGGTATTGATTTCTTTGAAATCAAAGAATCCGATATTGTAGTGATGGATATT
    AATGGAAATGTTGTAGAGGGAGAACGCTTGCCATCTAGCGAATGGTATATGCATTTGATT
    CAATATCAAACTCGTGATGATATCGATGCAATTATCCATGCTCATACAACTTATGCAACA
    GTATTAGCTTGTCTCAGAGAACCACTTCCGGCTAGTCATTATATGATTGCAGTGGCAGGG
    AAAGATGTTCGGGTAGCTGAGTATGCAACATATGGTACGAAAGAATTGGCTGTGAATGCA
    GCTAAAGCAATGGAAGGTCGTAGAGCAGTTTTACTAGCGAATCATGGAATTTTAGCAGGT
    GCACAAAATTTATTGAATGCATTTAATATTGTTGAAGAAGTTGAATATTGTGCAAAAATT
    TATTGTTTAGCTAAGAATTTTGGAGAGCCAGTAGTTCTTCCTGATGAGGAGATGGATTTA
    ATGGCAGAAAAATTTAAAACATACGGTCAGAGAAAATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    639

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPJ_2192 [new locus tag: SPJ_RS10865 ]
  • symbol: SPJ_2192
  • description: L-fuculose phosphate aldolase
  • length: 212
  • theoretical pI: 4.98385
  • theoretical MW: 23652
  • GRAVY: -0.133019

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Energy metabolism Sugars L-fuculose phosphate aldolase (TIGR01086; EC 4.1.2.17; HMM-score: 169.7)
    and 4 more
    Metabolism Energy metabolism Sugars L-ribulose-5-phosphate 4-epimerase (TIGR00760; EC 5.1.3.4; HMM-score: 90.4)
    Metabolism Amino acid biosynthesis Aspartate family methylthioribulose-1-phosphate dehydratase (TIGR03328; EC 4.2.-.-; HMM-score: 77.5)
    rhamnulose-1-phosphate aldolase (TIGR02624; EC 4.1.2.19; HMM-score: 37.4)
    Cellular processes Cellular processes Biosynthesis of natural products fluorothreonine transaldolase (TIGR04506; EC 2.2.1.8; HMM-score: 20)
  • TheSEED  :
    • L-fuculose phosphate aldolase (EC 4.1.2.17)
    Carbohydrates Monosaccharides L-fucose utilization  L-fuculose phosphate aldolase (EC 4.1.2.17)
  • PFAM:
    no clan defined Aldolase_II; Class II Aldolase and Adducin N-terminal domain (PF00596; HMM-score: 167.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001777
    • TAT(Tat/SPI): 0.000274
    • LIPO(Sec/SPII): 0.000286
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSDVKQELIKYGKKLVETDLTKGTGGNLSVFDREKQLMAITPSGIDFFEIKESDIVVMDINGNVVEGERLPSSEWYMHLIQYQTRDDIDAIIHAHTTYATVLACLREPLPASHYMIAVAGKDVRVAEYATYGTKELAVNAAKAMEGRRAVLLANHGILAGAQNLLNAFNIVEEVEYCAKIYCLAKNFGEPVVLPDEEMDLMAEKFKTYGQRK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulators: FucR* (repression) regulon, CcpA regulon
    FucR*(TF)important in Fucose utilization; RegPrecise    transcription unit transferred from TIGR4 data RegPrecise 
    CcpA(TF)important in Global catabolite repression; RegPrecise    transcription unit transferred from TIGR4 data RegPrecise 

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPJ_2192&oldid=105298"