From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 06-FEB-2015

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae ATCC 700669
  • locus tag: SPN23F15110 [new locus tag: SPN23F_RS07630 ]
  • pan locus tag?: PNEUPAN002831000
  • symbol: SPN23F15110
  • pan gene symbol?: pclA
  • synonym:
  • product: putative collagen-like surface-anchored protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPN23F15110 [new locus tag: SPN23F_RS07630 ]
  • symbol: SPN23F15110
  • product: putative collagen-like surface-anchored protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1462624..1467948
  • length: 5325
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    2701
    2761
    2821
    2881
    2941
    3001
    3061
    3121
    3181
    3241
    3301
    3361
    3421
    3481
    3541
    3601
    3661
    3721
    3781
    3841
    3901
    3961
    4021
    4081
    4141
    4201
    4261
    4321
    4381
    4441
    4501
    4561
    4621
    4681
    4741
    4801
    4861
    4921
    4981
    5041
    5101
    5161
    5221
    5281
    ATGAAACATTCACATAAAAAATCATTTGACTGGTATAGCATGCAACAACGTTATTCTATT
    CGTAAGTATTACTTTGGTGCAGTTAGTGTCTTGCTCGGTACCGCTTTGGTATTAGGTGCA
    GCAGCTAGTGTCCAAACAGTACAAGCGGAAGAAAACAAACAAGAAACTACCAATAGTATT
    TCTGTTGGTAGGGGAGAAGCAGCTACTAAACCAGCAGAGGTTTCTGCGTCTAATAAAGAG
    AAAACCTATGCAGCTCCAACTGTAGCTAATCCAGTAGAAACGACTCCAGTTAAAACTGGA
    GAAGTTACTAAACCAGCAGAAAAAGTTGAAGAAGCAAAAGACAAAAAAGAGGAAGTAACG
    CATCAAGATGCTATTGACAAGTCAAAATTGTTAACGGCTCTTTCGCGTGCTAAAAAGTTA
    GAAAGCAAGTTATATACAGAAGCAAGTGCTGCTAACTTGCAAACAAGTATCCAAGCTGGT
    CAAAGCTTGCTTGGGAAAGCAGATGCATCTGAAGCTGAATTATCAGCAGCAGAGTCATCT
    ATTCAATCATCTATTATTGGTCTAGAACTTCGTTCTAACTCTAACAAAGGAACTGTATCA
    GAAACGCCTGTAGCAAAGAAAGCTAATATAGTTGAAGCGAAGGAAGAGACTAAACCAGCT
    GTAACAACGACTGAACGTTCAGCTGTTGATAGCGCTATTTTGCCAATTAGCACAGCTGCT
    AAAGTAGAAACAACTTCAGCTCCAGCATCTACTAATGAAATCTTGAAACCAAGTTTGAGC
    CTTTCTGATGCTCGCCAAAATCCAGCTATCCGTAAGGAAGATGTTGATAGAGGGTATAGT
    GGTTTTAGAACAGCAGGAAGTGGCTTTAGAGCGGCTGGAAGTGGTTTTAGAGCAGCTGGA
    CCAGAAAATAAACCAATCTTAAATCCAAATAATACTATTGCATTTTCTGACATCAGTCAG
    GGCTTACATTCATTTCGTGGTATAGGACATTCACGTGGTGGTCGTGAAATCCATTATGAT
    GTAACGACAGTACGTAGAGGTAATAGATTGAATTTCACAATTAAATACTCTGGTCCAGGT
    GAATTTGTTAATAATAATTTTATCTTGGATAAAGGGGATGGATTTGGAAATCCTTCAAAT
    GCAACGATCACAAGTTCAAATCCAAGAGTAAGGGAGCAATCAAAATCTATTAGTCAGGGT
    GCCAACTACGTATCTCACTCAGGATACAGTATGACCTCTGCTACTTCAACAAATACGGAA
    CAAACTATCAGATTTAGTTTGCCTATCATTAATCCAAATGGTGATTTGTCTGTTCGTTTG
    AAACCAGTTACTTTTAACGTGGACCAAGGTGGTGGTGGTGCCGCTACTAGCAATGACCCA
    TACAGTAACTCCAACTATTATCATAGAGCAAATCCACTCCTCTTGGATGCAAACCCTTAT
    GGTGGTACTAATAATAAGACTGTTTCAGAAGACATTGACTTCCAAACTGTCTATCTTCCA
    ACTAGTAAGTTACCAGAAGGTCAAACTAGATTAGTTCGAGAAGGTGAAAAAGGACAACGT
    CAAATTACCTATAAAGTACATCGATTTGGTAACGAAACACTTTTAGGATTGCCAATTAGT
    AATAGAGTTACTAAAGAAGCTAAGCCACGTATTATGCAAATTGGTGTGGCTAAAGAGTTA
    ATCGATACAGTAAAACCACGTGTTGATCAAAATAAAGTTGGTGATACAAATAACCTCACT
    TTCTATCTTGATAACGATGGAAACGGTGTTTATACTGAGGGCGTAGACGAACTTGTTCAA
    AAAATTGCTATTAAAGATGGAGCCAAGGGTGAAAAAGGGGACCAAGGTGAACGCGGTCTA
    ACCGGAGCGCAAGGTACTAAAGGTGAAAAGGGAGATCAGGGTGAACGCGGTCTAACCGGA
    GCCCAAGGAGCTAAAGGTGAAAAAGGTGAACAAGGTTTTCAAGGGCGTGATGGTGAACAA
    GGACCAAAAGGAGAAGATGGGAAAACCCCAACAGTTAAAGTAACTGATGGTCAAGATGGA
    ACGCATACAATTACAATTAACGATGGTAAAGGTGGTATAACTACTACAGTAGTAAGAGAT
    GGATTTGATGGTGCAAGCCCTCTTGTTTCTACTCATAGAAATGAAGCAGATAAAACAACA
    ACTGTTATTTTCTATTATGATCTAAATGATAATAATCAATTTGATGAAGGAGATACAAAA
    CTTAAAGAAGTTGTTATCGCAGATGGAAAACAAGGACCAAAAGGTGACAAAGGTGATAAC
    GGAAAAGATGGATTCACACCAGAAGTAACAGTTACAGATAACAATAACGGAACACACACC
    ATCACAATCACACAACCAGACAACAGACCATCATTAACAACAATCGTTAAAAACGGTGAA
    GATGGAAAAACACCAAAAGTCAAAGCAGAACGAGATGATGCGAAGAAACAAACAACATTA
    ACATTCTACATTGACAAAGATGGAGATGGAAGTTACACAGCAGGAAAAGACGAGTTAGTT
    CAAACAACAGTAGTTAAAGACGGACAAGACGGAGCTGCAGGAGCATCTGGACGTGATGGA
    AAAGAAGTATTAAACGGAAAAGCAGACCCAACAACAGAAGGTAAAGATGGAGACACATTC
    GTAAATACACAAACAGGAGATGTATTCGTTAAGAAAGGTAACACTTGGGAACCAGCAGGA
    AACATCAAAGGACCGAAAGGTGACAAAGGTGCAGATGGTGCTAAAGGCGAAAAAGGAGAC
    CGAGGCGAACGCGGTCTAACCGGAGCGCAAGGTACTAAAGGTGAAAAGGGAGATCAGGGT
    GAACGCGGTCTAACCGGAGCGCAAGGTACTAAAGGTGAAAAAGGAGACCGAGGCGAACGC
    GGTCTAACTGGAGCGCAAGGTCAGGCAGGTCGTGACGCTGTAACTCCAACCGTAACCGTT
    AAAGATAATAAAAATGACGGCACTCATACTATCACTATTAACGACGGTAGAGGTAATGTT
    GCAAGTACTGTTGTAAGAGATGGTTTCGATGGCGCAAGTCCATTAGTTGCGACTCAACGA
    AATGAAGCAGATAAGACAACAACTGTTATCTTCTATTATGATCAAAATGGAAATAATGAA
    TTAGATGCTTCTGATAAGAAATTAAAAGAAGTTATTATTGCAGATGGTGCCAAAGGTGAA
    CAAGGTCTTCAAGGTCGTGATGGTCAAGACGGAGCTCAGGGACAAGCAGGACGCGACGGT
    AAAGACGTGTTGAACGGCAAAGCTAATCCAGAAGTAAATCAAGGTAAAGACGGTGATAAA
    TACGTCAATACAGAAACAGGCGACGTCTTCGTTAAGAATAACGGCAACTGGGATAAAGAG
    GGCAACATCAAGGGACCTAAAGGGGACAAAGGTGAACGCGGAGAAGATGGTAAGACTCCA
    GAAGTAACTGTAACTCCAGGTAAAGATGGCCATAGTACTGACATTACATTCACTGTTCCA
    GGTAAAGATCCAGTAACCTTCACTGTAAAAGATGGTAAGAATGGTAAAGATGGCCGTGCA
    CCGAAAATCAAAGTAGAAGATATTACTTCACCTTCAAGAATTAGACGCGATACAGATGCT
    GCTGCAACTCCAACGCGTAACGGTATCCGTGTTACAGTTTATGATGATGTTAATGACAAT
    GGGGTATACGACGAAGGTGTCGATAAAGTATTAAATAGTAAAGATATTTATAACGGTATA
    GATGGACGTGATGGTTCAGCTCCAACTATTACTACAAAAGATAATGGAGATGGAACTCAC
    ACTATCACAGTTCAAAACCCAGATAGTTCTGAATCAACAACAGTTGTTAAAGATGGTAAA
    GACGGTAAAACTGCGAATATCACTACAACAGAAAACCCAGATGGAAGCCACACAATTACG
    GTGACAAATCCAGATGGTTCAACTAAAGAAACTGTTGTTAAAAACGGTAAAGACGGTAAG
    ACTCCTAAAGTTGAAGTAACGGATAACAACGATGGAACTCATACTGTTAAAGTTACAGAT
    GGAGACGGCAATGTTACCAACGCTATCATCAAAGATGGTAAAGACGGTAAAGCTGCAACA
    GCAACAACTACTGAAAATCCAGATGGAAGCCACACAGTAACAATCACTAACCCAGACGGA
    ACTAAGAATGAGTTTGTTGTTAAGAATGGACGTGACGGTGTTGACGGACGTACTCCAACC
    GCATCTGTTCGTGATAATGGAGACGGAAGTCATACAATCGTTATTACAAATCCAGAAGGT
    GTGACAACTGAAACCACAGTTCGTGATGGTAAATCACCAAAAGTGACTATAACTGATGAA
    CAAAATGGAACTCATAAGATCTCTGTTCTAAATGGTGACGGAACAACTACTGAAACAATC
    ATTAAAGATGGTAAATCACCAGTAGCAACAGTTAGAGATAACCAAGATGGTACTTACACT
    ATTCGTGTGGAAAACGGTAATGGTACTGTTTCTGAAACCACAGTTCGTGACGGTAAATCA
    CCAACTGCTAAGGTTGTGGATAATGGAGATGGAACTCACACTATCACAGTTGTGAACTCA
    GACGGAACAACTACAACAACTACAGTTCGTGATGGTAGAGAACCAAAACTTGAAGTTATT
    GATAACAACGATGGTTCACACACTATTAAAGTGACAGGTGCTGATGGTAAAGGAACGACA
    ACTACAATCTTTGATGGTAAATCACCAAAAGCGAACATCGTTGATAACGGAGATGGAACT
    CATACATTAACAATCGTAGATTCTGATGGTCGTGAATACAAATCTATTATCAAAGATGGT
    AAAGACGGCAAAGATAGCGTTTCACCAACTGTAACTGTTAAAAATAATAACGATGGAACT
    CACGTTGTTACAATCACTAATCCAGATGGAAGTAAGACAGAAATGGTGATTAAAGACGGT
    AAAGATGGAAAATGTGGATGCCAAGACAAACCAGTAACACCATCAAATGACAAACCAGTT
    CCTCCAACACCAAATGTGCCGACACCAGAAGTACCGGTTAAACCTGTGCCAGCGCAACCA
    ACACCAAATGTACCGACACCAGAAGTGCCAGTACAACCAACTCCAGCTGTTCCAACACCA
    GAAGTACCGGTTAAACCAGTACCAGCGGTTCCAGAACAACCAGTAGTACCAACACCGGCT
    CAACCAGCAACTCCAGTAAATGCTAATCCAGTAGCACCAACTACAGGTAAAGAAAACCGT
    GGGGACAAATTACCTGAAACTGGAAGCCAATCTGATTATATCTCTGTTCTTTTAGGTAGC
    GGTATTCTATTGAGCCTATATGTAGGACGAAGAAAAGAAGATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2340
    2400
    2460
    2520
    2580
    2640
    2700
    2760
    2820
    2880
    2940
    3000
    3060
    3120
    3180
    3240
    3300
    3360
    3420
    3480
    3540
    3600
    3660
    3720
    3780
    3840
    3900
    3960
    4020
    4080
    4140
    4200
    4260
    4320
    4380
    4440
    4500
    4560
    4620
    4680
    4740
    4800
    4860
    4920
    4980
    5040
    5100
    5160
    5220
    5280
    5325

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPN23F15110 [new locus tag: SPN23F_RS07630 ]
  • symbol: SPN23F15110
  • description: putative collagen-like surface-anchored protein
  • length: 1774
  • theoretical pI: 5.47277
  • theoretical MW: 187129
  • GRAVY: -0.831962

⊟Function[edit | edit source]

  • TIGRFAM:
    Streptococcal surface-anchored protein repeat, S. criceti family (TIGR04203; HMM-score: 510.7)
    and 3 more
    gram-positive signal peptide, YSIRK family (TIGR01168; HMM-score: 35.6)
    Cell structure Cell envelope Other LPXTG cell wall anchor domain (TIGR01167; HMM-score: 17.1)
    Por secretion system C-terminal sorting domain (TIGR04183; HMM-score: 12.8)
  • TheSEED  :
    • Flagellar hook-length control protein FliK
  • PFAM:
    no clan defined CFSR; Collagen-flanked surface repeat (PF19079; HMM-score: 513.3)
    and 7 more
    Collagen; Collagen triple helix repeat (20 copies) (PF01391; HMM-score: 82.6)
    G5 (CL0593) G5; G5 domain (PF07501; HMM-score: 45.2)
    no clan defined YSIRK_signal; YSIRK type signal peptide (PF04650; HMM-score: 33.4)
    E-set (CL0159) BiPBP_C; Penicillin-Binding Protein C-terminus Family (PF06832; HMM-score: 26)
    no clan defined DUF4860; Domain of unknown function (DUF4860) (PF16152; HMM-score: 13.6)
    Gram_pos_anchor; LPXTG cell wall anchor motif (PF00746; HMM-score: 13.1)
    E-set (CL0159) Por_Secre_tail; Secretion system C-terminal sorting domain (PF18962; HMM-score: 10.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cellwall
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 9.99
    • Extracellular Score: 0.01
    • Internal Helix: 1
  • DeepLocPro: Cell wall & surface
    • Cytoplasmic Score: 0.0004
    • Cytoplasmic Membrane Score: 0.0022
    • Cell wall & surface Score: 0.9789
    • Extracellular Score: 0.0186
  • SignalP: Signal peptide SP(Sec/SPI) length 49 aa
    • SP(Sec/SPI): 0.947738
    • TAT(Tat/SPI): 0.02451
    • LIPO(Sec/SPII): 0.005982
    • Cleavage Site: CS pos: 49-50. VQA-EE. Pr: 0.9032
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: CAR69292 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKHSHKKSFDWYSMQQRYSIRKYYFGAVSVLLGTALVLGAAASVQTVQAEENKQETTNSISVGRGEAATKPAEVSASNKEKTYAAPTVANPVETTPVKTGEVTKPAEKVEEAKDKKEEVTHQDAIDKSKLLTALSRAKKLESKLYTEASAANLQTSIQAGQSLLGKADASEAELSAAESSIQSSIIGLELRSNSNKGTVSETPVAKKANIVEAKEETKPAVTTTERSAVDSAILPISTAAKVETTSAPASTNEILKPSLSLSDARQNPAIRKEDVDRGYSGFRTAGSGFRAAGSGFRAAGPENKPILNPNNTIAFSDISQGLHSFRGIGHSRGGREIHYDVTTVRRGNRLNFTIKYSGPGEFVNNNFILDKGDGFGNPSNATITSSNPRVREQSKSISQGANYVSHSGYSMTSATSTNTEQTIRFSLPIINPNGDLSVRLKPVTFNVDQGGGGAATSNDPYSNSNYYHRANPLLLDANPYGGTNNKTVSEDIDFQTVYLPTSKLPEGQTRLVREGEKGQRQITYKVHRFGNETLLGLPISNRVTKEAKPRIMQIGVAKELIDTVKPRVDQNKVGDTNNLTFYLDNDGNGVYTEGVDELVQKIAIKDGAKGEKGDQGERGLTGAQGTKGEKGDQGERGLTGAQGAKGEKGEQGFQGRDGEQGPKGEDGKTPTVKVTDGQDGTHTITINDGKGGITTTVVRDGFDGASPLVSTHRNEADKTTTVIFYYDLNDNNQFDEGDTKLKEVVIADGKQGPKGDKGDNGKDGFTPEVTVTDNNNGTHTITITQPDNRPSLTTIVKNGEDGKTPKVKAERDDAKKQTTLTFYIDKDGDGSYTAGKDELVQTTVVKDGQDGAAGASGRDGKEVLNGKADPTTEGKDGDTFVNTQTGDVFVKKGNTWEPAGNIKGPKGDKGADGAKGEKGDRGERGLTGAQGTKGEKGDQGERGLTGAQGTKGEKGDRGERGLTGAQGQAGRDAVTPTVTVKDNKNDGTHTITINDGRGNVASTVVRDGFDGASPLVATQRNEADKTTTVIFYYDQNGNNELDASDKKLKEVIIADGAKGEQGLQGRDGQDGAQGQAGRDGKDVLNGKANPEVNQGKDGDKYVNTETGDVFVKNNGNWDKEGNIKGPKGDKGERGEDGKTPEVTVTPGKDGHSTDITFTVPGKDPVTFTVKDGKNGKDGRAPKIKVEDITSPSRIRRDTDAAATPTRNGIRVTVYDDVNDNGVYDEGVDKVLNSKDIYNGIDGRDGSAPTITTKDNGDGTHTITVQNPDSSESTTVVKDGKDGKTANITTTENPDGSHTITVTNPDGSTKETVVKNGKDGKTPKVEVTDNNDGTHTVKVTDGDGNVTNAIIKDGKDGKAATATTTENPDGSHTVTITNPDGTKNEFVVKNGRDGVDGRTPTASVRDNGDGSHTIVITNPEGVTTETTVRDGKSPKVTITDEQNGTHKISVLNGDGTTTETIIKDGKSPVATVRDNQDGTYTIRVENGNGTVSETTVRDGKSPTAKVVDNGDGTHTITVVNSDGTTTTTTVRDGREPKLEVIDNNDGSHTIKVTGADGKGTTTTIFDGKSPKANIVDNGDGTHTLTIVDSDGREYKSIIKDGKDGKDSVSPTVTVKNNNDGTHVVTITNPDGSKTEMVIKDGKDGKCGCQDKPVTPSNDKPVPPTPNVPTPEVPVKPVPAQPTPNVPTPEVPVQPTPAVPTPEVPVKPVPAVPEQPVVPTPAQPATPVNANPVAPTTGKENRGDKLPETGSQSDYISVLLGSGILLSLYVGRRKED

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPN23F15110&oldid=56934"