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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 13-DEC-2020
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae ATCC 700669
- locus tag: SPN23F_RS07730 [old locus tags: SPN23F15300 SPN23F_15300 ]
- pan locus tag?: PNEUPAN000126000
- symbol: SPN23F_RS07730
- pan gene symbol?: hol
- synonym:
- product: phage holin
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPN23F_RS07730 [old locus tags: SPN23F15300 SPN23F_15300 ]
- symbol: SPN23F_RS07730
- product: phage holin
- replicon: chromosome
- strand: -
- coordinates: 1488824..1489156
- length: 333
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_011900 (1488824..1489156) NCBI
- BioCyc: SPN23F_RS07730 BioCyc
- MicrobesOnline: see SPN23F15300
- PneumoBrowse for strain D39V:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301ATGCAACAAATTACTGAAATCATCATTGCTTTTGCGACAAGCTTTTTAACAGTAGCAGTA
GGCGGTATTGTAAAAGCAGTAAAAGATTATCTTTTGCGTAAAGGCGGAGAGAAAGCGGTG
ATCATCGCTGAAATTCTAGCTAAAAATGCAGTTCATGCCGTTGAGCAAGTAGCTTCAGAG
ACTGGCTATAAGGGCGAAGAAAAGCTGGAGCAGGCTCGTGCTAAAGTCCGTGCTGAGCTT
ACAAAATACAATATTAGTATGACTGACAAAGACTTAGACACCTTCGTAGAGTCAGCAGTG
AAGCAGATGAATGACGCATGGAAAGGACGATAG60
120
180
240
300
333
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPN23F_RS07730 [old locus tags: SPN23F15300 SPN23F_15300 ]
- symbol: SPN23F_RS07730
- description: phage holin
- length: 110
- theoretical pI: 8.90779
- theoretical MW: 12100.9
- GRAVY: -0.0890909
⊟Function[edit | edit source]
- TIGRFAM: Mobile and extrachromosomal element functions Prophage functions phage holin, LL-H family (TIGR01673; HMM-score: 53.6)and 2 moreSignal transduction Other diguanylate cyclase (GGDEF) domain (TIGR00254; HMM-score: 12.9)Regulatory functions Small molecule interactions diguanylate cyclase (GGDEF) domain (TIGR00254; HMM-score: 12.9)
- TheSEED: see SPN23F15300
- PFAM: no clan defined Phage_holin_6_1; Bacteriophage holin of superfamily 6 (Holin_LLH) (PF09682; HMM-score: 90.2)and 1 moreFrhB_FdhB_N; Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term (PF04422; HMM-score: 15.2)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helix: 1
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.327455
- TAT(Tat/SPI): 0.006375
- LIPO(Sec/SPII): 0.019643
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_001186206 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MQQITEIIIAFATSFLTVAVGGIVKAVKDYLLRKGGEKAVIIAEILAKNAVHAVEQVASETGYKGEEKLEQARAKVRAELTKYNISMTDKDLDTFVESAVKQMNDAWKGR
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: SPN23F_RS07725 < SPN23F_RS07730 < SPN23F_RS07735 < SPN23F_RS07740 < SPN23F_RS07745 < SPN23F_RS07750 < SPN23F_RS07755 < SPN23F_RS07760 < SPN23F_RS07765 < SPN23F_RS07770 < SPN23F_RS07775 < SPN23F_RS07780 < SPN23F_RS07785 < SPN23F_RS07790 < SPN23F_RS07795 < SPN23F_RS07800 < SPN23F_RS07805 < SPN23F_RS07810 < SPN23F_RS07815 < SPN23F_RS13580 < SPN23F_RS07820 < SPN23F_RS07825 < SPN23F_RS07830
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V:
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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