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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 13-DEC-2020

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae ATCC 700669
  • locus tag: SPN23F_RS07750 [old locus tags: SPN23F15340 SPN23F_15340 ]
  • pan locus tag?: PNEUPAN000624000
  • symbol: SPN23F_RS07750
  • pan gene symbol?: —
  • synonym:
  • product: phage tail protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPN23F_RS07750 [old locus tags: SPN23F15340 SPN23F_15340 ]
  • symbol: SPN23F_RS07750
  • product: phage tail protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1491998..1497025
  • length: 5028
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_011900 (1491998..1497025) NCBI
  • BioCyc: SPN23F_RS07750 BioCyc
  • MicrobesOnline: see SPN23F15340
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    2701
    2761
    2821
    2881
    2941
    3001
    3061
    3121
    3181
    3241
    3301
    3361
    3421
    3481
    3541
    3601
    3661
    3721
    3781
    3841
    3901
    3961
    4021
    4081
    4141
    4201
    4261
    4321
    4381
    4441
    4501
    4561
    4621
    4681
    4741
    4801
    4861
    4921
    4981
    ATGCTTTTGACAATCCATGATGCAAATTTACAAAAGGTAGCATTTATTGATAACGAAAAA
    CAAGGTACGTTAAATTATTACGATGATACTTGGACAAGAAGTCTTGCAACAGGTTCGTCA
    ACGTTTGAGTTTACGGTATTTAAAAAGGCTGTAAAGTCTGATTTACCTCTTGCTAAAGCC
    TATCATCATTTGAATGAGCATGCATTTGTCTCATTTAAGTACAAGGGTAAAAGCTTTGTG
    TTTAATATCATTATTGTTGAAGAAAATGAGCAGACAATCAAATGTTATTGTGAAAATCTC
    AATCTTGAGTTAATCAATGAGCTTGCGAACCCTTATAAATCTAACAAAGCGATGACTTTC
    AAAGAGTATTGTGAGGCGATGGATCTTTTAAATTATACTCACCTTTCTATTGGTATCAAT
    GAAATATCAGATTATAAGCGTACTCTGGAATGGGAGGGGCAAGAAACCAAACTAGCCCGT
    CTATTAAGCCTAGCCAAACGATTTGATGCTGAGATTGAATTTGATACACAGTTAAATGCT
    GATAGCACTATCAAAAAGTTTAGTGTTAATGTTTATCATGAAAACGATGACAACCATCAA
    GGGGTGGGACGTGTAAGAAATGATGTCATTGTTAAATACGGAAAAAACATCCACTCTATT
    ACAAGAAAAGTGGATAAGACTGGTATTTTCAATACAATCAGACCGACTGGTAAAATGCCA
    ACGGTTGAAGAAGAACTGAGCGGAGATAAGGGCTCCAAAAGCGAAACTGTAAAAAATGCA
    GATGGTTCAACGACGAAAACCACAATCTCTACAGCCTCAGATGGGACTAAGAGCAAAACT
    ATTGTCCACACTAAAGTTACAAAGTTAGCGGACAAGACACGGATCACAACGACCACAACG
    ACTCGTTCTGATGGTTCCATAGAACAAACTGTTACAACCAGCAAAAAAGGCGGAGCATCA
    ACGTCTGAAACAAAAGTCTTGAAAAAACCAAATCCAAAAGAAAAAACAAATACAACTGAG
    GATGTTTTGACGATTGAGGGATTGGATGAATGGGAAGTAAAGAACGAGAAAGGGATAGTT
    GAATTTTATCAAAGAGGGCAAGCACTGTATGCGCCTATTTCAATGCAACTATATCCCTCA
    ACCTTTACTCATTCAACAGGGGAGCTTGACCAGTGGACAAGAAAAGATTTTCATTTTGAA
    ACAGATGAGCCAAACGAGTTAAGACGTTTAGGTTATCTCAAATTGAAAAAGTATTGTTAT
    CCAGCTATCACTTATGAAGTTGATGGCTTTGTCGATGCTGATATTGGAGATACTGTTAAA
    GTCCATGATGACGGTTTTGCCCCTCTATTGATGATTCAAGCACGGGTTACTGATCAAAAA
    ATCAGTTTCACAAATCCAGTGAGAAATAAGACAATATTTGACAATTTCAAGGCACTTGAA
    AACAAACTATCAGCTGATATCCAGTCAGCCTTTGAGAGATTGTTTGAAGCTGCTAAACCA
    TATACTATCAAATTATCAACGGACAATGGTGTTATCTTTAAAAATCAGATCGGCCAGAGT
    CTAGTAACCCCAACCTTATACAAGGGAGGAAAACCAGTCGTTGTTGGTGTTACTTGGCGA
    TGGGCACTTGATGGAGAAGTAACAACAGGGATGACTTACTTAGTTAGAGGCTCAAATGTA
    ACTGATACAGTTACTCTGACAGTTGCAGCTTACATTGGAAATAAAGAGGTTGCTGTTGAT
    GAGATATCGCTTGTTAATGTTGCTGATGGAAAACTTGGTACACCTGGAACTCCAGGGCGA
    GATGGCCGTACTCCTTATGTCCATACAGCATGGGCTAATAATGCAACAGGAACAGATGGA
    TTTAGTCTTGATAGCTCAATCAATAAACTCTATATTGGTATTTATACAGACTTTGAACCA
    AACGATAGCACCGACCCTAAAAAATACAAGTGGGCTAAAGTAAAAGGAGAAAAGGGAGAA
    AAAGGAGATAAAGGAGAACCGGGACAACGTGGTTTAGATGGCTTGCAAGGTGCAAGAGGT
    GAACAAGGATTACCTGGTCGCAATGGTGCAGATGGCCGTACTCAATACACTCACATAGCT
    TACAGCAATAGCGCTGATGGAACTAAGGATTTTTCTGTAAGCGCCTCTGATAGAGCTTAT
    ATCGGTATGTATGTTGATTTTAATAGAGCTGATAGCAATACTCCATCTGATTACAATTGG
    ACACTTGTAAAAGGATCTGATGGCGCAAACGGTGTGGCAGGTAAGGCTGGTACAGATGGT
    AGGACACCATACTTACACATAGCTTACGCCACATCAAATAATGGTTCACAAGGTTTTTCA
    ACTACTGACAGTACAAATAAAACGTATATCGGAACATACACAGATTACACTCAGGCAGAT
    AGTACAGATTACAGAGTGTATAAGTGGACGTTGATAAAAGGGGCAGATGGTACTGGTATT
    TCTAATGTAACTAATTATTATTTAGCTACTACAGTCTCAACAGGTATCACAAGAACAAGC
    GCAGGGTGGACAACTACGCCACAGCCTATCACATCAGACAAGCGTTATTTATGGAATTAT
    CGAGTTGAGCTATACACAAACGGTACAAGTAAGACAACAGAGCCTACTGTTATTGGTGTG
    CACGGGGAAAAAGGAGAACGTGGATTACAAGGTTTACAAGGCTTGCAAGGTGCACGAGGT
    GAACAAGGTATTCCTGGACCTAGAGGGGCAGATGGTCGTACACAATATACTCACATGGCC
    TATGCCGATAACGCAACAGGTGGTGGATTCAGTCAAACAAACACTGACAAAGCCTTTGTT
    GGGGTGTACATTGACTTTAATCCAACAGACAGCAGAAATCCTGCTGATTATCGCTGGACA
    AGATGGAAAGGTCGTGATGGCGCAAATGGCGTGGCAGGTAGGGCTGGTGCAGATGGTCGT
    ACACCATACTTACACATAGCTTACGCCACATCAAATAACGGCTCACAAGGCTTCTCAACT
    ACTGACAGTACAAATAAAACGTATATCGGAACATACACAGATTACACTCAGGCAGATAGC
    ACAGACCCTAAAAAATACAAGTGGGCTAAAGTAAAAGGGGACAAGGGAGAAAAAGGCGAT
    AAAGGAGAACGTGGATTACAAGGTTTACAAGGCTTGCAAGGTGCACGAGGTGAACAAGGT
    ATTCCTGGACCTAGAGGGGCAGATGGTCGTACACAATATACTCACATGGCCTATGCCGAT
    AACGCAACAGGTGGTGGATTCAGTCAAACAAACACTGACAAAGCCTTTGTTGGGGTGTAC
    ATTGACTTTAATCCAACAGACAGCAGAAATCCTGCTGATTATCGCTGGACAAGATGGAAA
    GGTCGTGATGGCGCAAATGGCGTGGCAGGTAGGGCTGGTGCAGATGGTCGTACACCATAC
    TTACACATAGCTTACGCCACATCAAATAACGGCTCACAAGGCTTCTCAACTACTGACAGT
    ACAAATAAAACGTATATCGGAACATACACAGATTACACTCAGGCAGATAGCACAGACCCT
    AAAAAATACAAGTGGGCTAAAGTAAAAGGGGACAAGGGAGAAAAAGGCGATAAAGGAGAA
    CGTGGATTACAAGGTTTACAAGGCTTGCAAGGCGCACGAGGTGAACAAGGTATTCCTGGA
    CCTAGAGGGGCAGATGGTCGTACACAATATACTCACATGGCCTATGCCGATAACGCAACA
    GGTGGTGGATTCAGTCAAACAAACACTGACAAAGCCTTTGTTGGGGTGTACATTGACTTT
    AATCCAACAGACAGCAGAAATCCTGCTGATTATCGCTGGACAAGATGGAAAGGTCGTGAT
    GGCGCAAATGGCGTGGCAGGTAGGGCTGGTGCAGATGGTAGAACGCCTTATGTTCACTTT
    GCGTATTCTGAAAATGCAGATGGATCAGGTTTGACAATGACAGATAACGGACAGCGTTAT
    TTTGGTCATTATTCAGATTATGAGAAACCTGATAGTTCGGATAAAACTAAGTACAAATGG
    GCTGATCGTTGGGCTAAAGTTGATGGAGGTTATGTAAATATCTATGCATTGTCTAAGAAT
    AGAAGTATTGGGAAATCTTATCATGTTTCTGAATTTAATATGGATGTACTTTCAGGAAAT
    ATCACTCTAAAAGCAATTGGGTCAGATCCATACATTGGCGCCGTTTCTTCTCATCCAGGT
    ATTTTTATAAAGCAACAGGGAATGAAAATCCCAGTTATACAAGGGAGATCTATTTGTATA
    ACAATAACAAATCCTTTATTTAGAAAAAATTACATCTCGTTTTTTAATTCATTAGGTAAA
    ACTGTTAAAACATATAAGCATTACAACACAAATAAATTTTTAATATCTTCAGCTGATTTG
    GTAGGTGTTGAATTTATCGCTTTACGATATGGTGCAGGAAGCTCGAATATACAAATTGGA
    ACCGTACTAGAGACAAAAGTAAAGGTAGAATATGGAACCGTGCATAGCGACTGGTCGCCC
    GCTCCAGAAGATATTGAAAGTAATATTAACTCTAAAGCTGATCAGGGTCTGACTCAAGAG
    CAGTTAAATGCCCTCAATGAGAAGTCACAAATTTTAGAGGCTGAAATGAAAGCGAAAGCA
    TCGATGGAGGCCTTTAGTGAATTAGAAAAAGCATATAATGCCTTTGTGAAATCAAATGCA
    GATAGTCGAAAAAAATCTGAGTCTGATTTAGTTGAAGCAGGTAGAAGAATTGATTTGCTG
    ACGACACAATTTGGAGGATTAGCAGAGCTTAAAACATTCATTGATACTTACATGAAAAGC
    ACAAATGAGGGCTTGATTATAGGTAAGAATGATGCAAGCTCTACTATTAAGGTATCAAGT
    GATAGAATATCCATGTTTTCTGCAGGTAAGGAAGTTATGTACATTTCGCAAGGTGTAATA
    AATATTGATAATGGTATTTTTACTGCATCAATTCAAATTGGACGTTTTAGAACAGAACAG
    TATCATCTTAACAAAGATGTGAATGTCATACGATATATAGGAGGTTAA
    60
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    540
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    720
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    840
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    960
    1020
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    2160
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    2820
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    3720
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    3840
    3900
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    4140
    4200
    4260
    4320
    4380
    4440
    4500
    4560
    4620
    4680
    4740
    4800
    4860
    4920
    4980
    5028

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPN23F_RS07750 [old locus tags: SPN23F15340 SPN23F_15340 ]
  • symbol: SPN23F_RS07750
  • description: phage tail protein
  • length: 1675
  • theoretical pI: 8.71389
  • theoretical MW: 184092
  • GRAVY: -0.667343

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Mobile and extrachromosomal element functions Prophage functions phage holin, LL-H family (TIGR01673; HMM-score: 8.3)
  • TheSEED: see SPN23F15340
  • PFAM:
    no clan defined Collagen; Collagen triple helix repeat (20 copies) (PF01391; HMM-score: 99.1)
    and 1 more
    SH3DP; SH3 fold domain associated with phage DNA polymerases (PF20287; HMM-score: 24)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.006881
    • TAT(Tat/SPI): 0.000672
    • LIPO(Sec/SPII): 0.000956
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000927607 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MLLTIHDANLQKVAFIDNEKQGTLNYYDDTWTRSLATGSSTFEFTVFKKAVKSDLPLAKAYHHLNEHAFVSFKYKGKSFVFNIIIVEENEQTIKCYCENLNLELINELANPYKSNKAMTFKEYCEAMDLLNYTHLSIGINEISDYKRTLEWEGQETKLARLLSLAKRFDAEIEFDTQLNADSTIKKFSVNVYHENDDNHQGVGRVRNDVIVKYGKNIHSITRKVDKTGIFNTIRPTGKMPTVEEELSGDKGSKSETVKNADGSTTKTTISTASDGTKSKTIVHTKVTKLADKTRITTTTTTRSDGSIEQTVTTSKKGGASTSETKVLKKPNPKEKTNTTEDVLTIEGLDEWEVKNEKGIVEFYQRGQALYAPISMQLYPSTFTHSTGELDQWTRKDFHFETDEPNELRRLGYLKLKKYCYPAITYEVDGFVDADIGDTVKVHDDGFAPLLMIQARVTDQKISFTNPVRNKTIFDNFKALENKLSADIQSAFERLFEAAKPYTIKLSTDNGVIFKNQIGQSLVTPTLYKGGKPVVVGVTWRWALDGEVTTGMTYLVRGSNVTDTVTLTVAAYIGNKEVAVDEISLVNVADGKLGTPGTPGRDGRTPYVHTAWANNATGTDGFSLDSSINKLYIGIYTDFEPNDSTDPKKYKWAKVKGEKGEKGDKGEPGQRGLDGLQGARGEQGLPGRNGADGRTQYTHIAYSNSADGTKDFSVSASDRAYIGMYVDFNRADSNTPSDYNWTLVKGSDGANGVAGKAGTDGRTPYLHIAYATSNNGSQGFSTTDSTNKTYIGTYTDYTQADSTDYRVYKWTLIKGADGTGISNVTNYYLATTVSTGITRTSAGWTTTPQPITSDKRYLWNYRVELYTNGTSKTTEPTVIGVHGEKGERGLQGLQGLQGARGEQGIPGPRGADGRTQYTHMAYADNATGGGFSQTNTDKAFVGVYIDFNPTDSRNPADYRWTRWKGRDGANGVAGRAGADGRTPYLHIAYATSNNGSQGFSTTDSTNKTYIGTYTDYTQADSTDPKKYKWAKVKGDKGEKGDKGERGLQGLQGLQGARGEQGIPGPRGADGRTQYTHMAYADNATGGGFSQTNTDKAFVGVYIDFNPTDSRNPADYRWTRWKGRDGANGVAGRAGADGRTPYLHIAYATSNNGSQGFSTTDSTNKTYIGTYTDYTQADSTDPKKYKWAKVKGDKGEKGDKGERGLQGLQGLQGARGEQGIPGPRGADGRTQYTHMAYADNATGGGFSQTNTDKAFVGVYIDFNPTDSRNPADYRWTRWKGRDGANGVAGRAGADGRTPYVHFAYSENADGSGLTMTDNGQRYFGHYSDYEKPDSSDKTKYKWADRWAKVDGGYVNIYALSKNRSIGKSYHVSEFNMDVLSGNITLKAIGSDPYIGAVSSHPGIFIKQQGMKIPVIQGRSICITITNPLFRKNYISFFNSLGKTVKTYKHYNTNKFLISSADLVGVEFIALRYGAGSSNIQIGTVLETKVKVEYGTVHSDWSPAPEDIESNINSKADQGLTQEQLNALNEKSQILEAEMKAKASMEAFSELEKAYNAFVKSNADSRKKSESDLVEAGRRIDLLTTQFGGLAELKTFIDTYMKSTNEGLIIGKNDASSTIKVSSDRISMFSAGKEVMYISQGVINIDNGIFTASIQIGRFRTEQYHLNKDVNVIRYIGG

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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