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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 10-NOV-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae ST556
  • locus tag: MYY_RS00490
  • pan locus tag?: PNEUPAN000624000
  • symbol: MYY_RS00490
  • pan gene symbol?: —
  • synonym:
  • product: phage tail protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: MYY_RS00490
  • symbol: MYY_RS00490
  • product: phage tail protein
  • replicon: chromosome
  • strand: +
  • coordinates: 72113..78583
  • length: 6471
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_017769 (72113..78583) NCBI
  • BioCyc: MYY_RS00490 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

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    1981
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    2641
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    5881
    5941
    6001
    6061
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    6181
    6241
    6301
    6361
    6421
    ATGCTTTTGACAATCCATGATGCAAATTTACAAAAGGTAGCATTTATTGATAACGAAAAA
    CAAGGTACGTTAAATTATTACGATGATACTTGGACAAGAAGTCTTGCAACAGGTTCGTCA
    ACGTTTGAGTTTACGGTATTTAAAAAGGCTGTAAAGTCTGATTTACCTCTTGCTAAAGCC
    TATCATCATTTGAATGAGCATGCATTTGTCTCATTTAAGTACAAGGGTAAAAGCTTTGTG
    TTTAATATCATTATTGTTGAAGAAAATGAGCAGACAATCAAATGTTATTGTGAAAATCTC
    AATCTTGAGTTAATCAATGAGCTTGCGAACCCTTATAAATCTAACAAAGCGATGACTTTC
    AAAGAGTATTGTGAGGCGATGGATCTTTTAAATTATACTCACCTTTCTATTGGTATCAAT
    GAAATATCAGATTATAAGCGTACTCTGGAATGGGAGGGGCAAGAAACCAAACTAGCCCGT
    CTATTAAGCCTAGCCAAACGATTTGATGCTGAGATTGAATTTGATACACAGTTAAATGCT
    GATAGCACTATCAAAAAGTTTAGTGTTAATGTTTATCATGAAAACGATGACAACCATCAA
    GGGGTGGGACGTGTAAGAAATGATGTCATTGTTAAATACGGAAAAAACATCCACTCTATT
    ACAAGAAAAGTGGATAAGACTGGTATTTTCAATACAATCAGACCGACTGGTAAAATGCCA
    ACGGTTGAAGAAGAACCGAGCGGAGATAAGGGCTCCAAAAGCGAAACTGTAAAAAATGCA
    GATGGTTCAACGACGAAAACCACAATCTCTACAGCCTCAGATGGGACTAAGAGCAAAACT
    ATTGTCCACACTAAAGTTACAAAGTTAGCGGACAAGACACGGATCACAACGACCACAACG
    ACTCGTTCTGATGGTTCCATAGAACAAACTGTTACAACCAGCAAAAAAGGCGGAGCATCA
    ACGTCTGAAACAAAAGTCTTGAAAAAACCAAATCCAAAAGAAAAAACAAATACAACTGAG
    GATGTTTTGACGATTGAGGGATTGGATGAATGGGAAGTAAAGAACGAGAAAGGGATAGTT
    GAATTTTATCAAAGAGGGCAAGCACTGTATGCGCCTATTTCAATGCAACTATATCCCTCA
    ACCTTTACTCATTCAACAGGGGAGCTTGACCAGTGGACAAGAAAAGATTTTCATTTTGAA
    ACAGATGAGCCAAACGAGTTAAGACGTTTAGGTTATCTCAAATTGAAAAAGTATTGTTAT
    CCAGCTATCACTTATGAAGTTGATGGCTTTGTCGATGCTGATATTGGAGATACTGTTAAA
    GTCCATGATGACGGTTTTGCCCCTCTATTGATGATTCAAGCACGGGTTACTGATCAAAAA
    ATCAGTTTCACAAATCCAGTGAGAAATAAGACAATATTTGACAATTTCAAGGCACTTGAA
    AACAAACTATCAGCTGATATCCAGTCAGCCTTTGAGAGATTGTTTGAAGCTGCTAAACCA
    TATACTATCAAATTATCAACGGACAATGGTGTTATCTTTAAAAATCAGATCGGCCAGAGT
    CTAGTAACCCCAACCTTATACAAGGGAGGAAAACCAGTCGTTGTTGGTGTTACTTGGCGA
    TGGGCACTTGATGGAGAAGTAACAACAGGGATGACTTACTTAGTTAGAGGCTCAAATGTA
    ACTGATACAGTTACTCTGACAGTTGCAGCTTACATTGGAAATAAAGAGGTTGCTGTTGAT
    GAGATATCGCTTGTTAATGTTGCTGATGGAAAACTTGGTACACCTGGAACTCCAGGGCGA
    GATGGCCGTACTCCTTATGTCCATACAGCATGGGCTAATAATGCAACAGGAACAGATGGA
    TTTAGTCTTGATAGCTCAATCAATAAACTCTATATTGGTATTTATACAGACTTTGAACCA
    AACGATAGCACAGACCCTAAAAAATACAAGTGGGCTAAAGTAAAAGGAGAAAAGGGAGAA
    AAAGGAGATAAAGGAGAACCGGGACAACGTGGTTTAGATGGCTTGCAAGGTGCAAGAGGT
    GAACAAGGATTACCTGGTCGCAATGGTGCAGATGGCCGTACTCAATACACTCACATAGCT
    TACAGCAATAGCGCTGATGGAACTAAGGATTTTTCTGTAAGCGCCTCTGATAGAGCTTAT
    ATCGGTATGTATGTTGATTTTAATAGTGCTGATAGTAATACTCCATCTGATTACAATTGG
    ACACTTGTAAAAGGAGCTGATGGCGCAAACGGCGTGGCAGGTAAGGCTGGTACAGATGGT
    AGGACACCATACTTACACATAGCTTACGCCACATCAAATAATGGATCACAAGGTTTTTCA
    ACTACTGACAGTACAAATAAAACGTATATCGGAACATACACAGATTACACTCAGGCAGAT
    AGCACAGATTACAGAGTGTATAAGTGGACGTTGATAAAAGGGGCAGATGGTACTGGTATT
    TCTAATGTAACTAATTATTATTTAGCTACTACAGTCTCAACAGGTATCACAAGAACAAGC
    GCAGGGTGGACAACTACGCCACAGCCTATCACATCAGACAAGCGTTATTTATGGAATTAT
    CGAGTTGAGCTATACACAAACGGTACAAGTAAGACAACAGAGCCTACTGTTATTGGTGTG
    CACGGGGAAAAAGGAGAACGTGGATTACAAGGTTTACAAGGCTTGCAAGGTGCACGAGGT
    GAACAAGGTATTCCTGGACCTAGAGGGGCAGATGGTCGTACACAATATACTCACATGGCC
    TATGCCGATAACGCAACAGGTGGTGGATTCAGTCAAACAAACACTGACAAAGCCTTTGTT
    GGGGTGTACATTGACTTTAATCCAACAGACAGCAGAAATCCTGCTGATTATCGCTGGACA
    AGATGGAAAGGTCGTGATGGCGCAAACGGCGTGGCAGGTAGGGCTGGTGCAGATGGTAGG
    ACACCATACTTACACATAGCTTACGCCACATCAAATAACGGCTCACAAGGCTTCTCAACT
    ACTGACAGTACAAATAAAACGTATATCGGAACATACACAGATTACACTCAGGCAGATAGC
    ACAGACCCTAAAAAATACAAGTGGGCTAAAGTAAAAGGGGACAAGGGAGAAAAAGGCGAT
    AAAGGAGAACGTGGATTACAAGGTTTACAAGGCTTGCAAGGTGCACGAGGTGAACAAGGT
    ATTCCTGGACCTAGAGGGGCAGATGGTCGTACACAATATACTCACATGGCCTATGCCGAT
    AACGCAACAGGTGGTGGATTCAGTCAAACAAACACTGACAAAGCCTTTGTTGGGGTGTAC
    ATTGACTTTAATCCAACAGACAGCAGAAATCCTGCTGATTATCGCTGGACAAGATGGAAA
    GGTCGTGATGGCGCAAACGGCGTGGCAGGTAGGGCTGGTGCAGATGGTAGGACACCATAC
    TTACACATAGCTTACGCCACATCAAATAACGGCTCACAAGGCTTCTCAACTACTGACAGT
    ACAAATAAAACGTATATCGGAACATACACAGATTACACTCAGGCAGATAGCACAGACCCT
    AAAAAATACAAGTGGGCTAAAGTAAAAGGGGACAAGGGAGAAAAAGGCGATAAAGGAGAA
    CGTGGATTACAAGGTTTACAAGGCTTGCAAGGTGCACGAGGTGAACAAGGTATTCCTGGA
    CCTAGAGGGGCAGATGGCCGTACACAATATACTCACATGGCCTATGCCGATAACGCAACA
    GGTGGTGGATTCAGTCAAACAAACACTGACAAAGCCTTTGTTGGGGTGTACATTGACTTT
    AATCCAACAGACAGCAGAAATCCTGCTGATTATCGCTGGACAAGATGGAAAGGTCGTGAT
    GGCGCAAACGGCGTGGCAGGTAGGGCTGGTGCAGATGGTAGGACACCATACTTACACATA
    GCTTACGCCACATCAAATAACGGCTCACAAGGCTTCTCAACTACTGACAGTACAAATAAA
    ACGTATATCGGAACATACACAGATTACACTCAGGCAGATAGCACAGACCCTAAAAAATAC
    AAGTGGGCTAAAGTAAAAGGGGACAAGGGAGAAAAAGGCGATAAAGGAGAACGTGGATTA
    CAAGGTTTACAAGGCTTGCAAGGTGCACGAGGTGAACAAGGTATTCCTGGACCTAGAGGG
    GCAGATGGTCGTACACAATATACTCACATGGCCTATGCCGATAACGCAACAGGTGGTGGA
    TTCAGTCAAACAAACACTGACAAAGCCTTTGTTGGGGTGTACATTGACTTTAATCCAACA
    GACAGCAGAAATCCTGCTGATTATCGCTGGACAAGATGGAAAGGTCGTGATGGCGCAAAC
    GGCGTGGCAGGTAGGGCTGGTGCAGATGGTAGGACACCATACTTACACATAGCTTACGCC
    ACATCAAATAACGGCTCACAAGGCTTCTCAACTACTGACAGTACAAATAAAACGTATATC
    GGAACATACACAGATTACACTCAGGCAGATAGCACAGACCCTAAAAAATACAAGTGGGCT
    AAAGTAAAAGGGGACAAGGGAGAAAAAGGCGATAAAGGAGAACGTGGATTACAAGGTTTA
    CAAGGCTTGCAAGGTGCACGAGGTGAACAAGGTATTCCTGGACCTAGAGGGGCAGATGGT
    CGTACACAATATACTCACATGGCCTATGCCGATAACGCAACAGGTGGTGGATTCAGTCAA
    ACAAACACTGACAAAGCCTTTGTTGGGGTGTACATTGACTTTAATCCAACAGACAGCAGA
    AATCCTGCTGATTATCGCTGGACAAGATGGAAAGGTCGTGATGGCGCAAACGGCGTGGCA
    GGTAGGGCTGGTGCAGATGGTAGGACACCATACTTACACATAGCTTACGCCACATCAAAT
    AACGGCTCACAAGGCTTCTCAACTACTGACAGTACAAATAAAACGTATATCGGAACATAC
    ACAGATTACACTCAGGCAGATAGCACAGACCCTAAAAAATACAAGTGGGCTAAAGTAAAA
    GGGGACAAGGGAGAAAAAGGCGATAAAGGAGAACGTGGATTACAAGGTTTACAAGGCTTG
    CAAGGTGCACGAGGTGAACAAGGTATTCCTGGACCTAGAGGGGCAGATGGCCGTACACAA
    TATACTCACATGGCCTATGCCGATAACGCAACAGGTGGTGGATTCAGTCAAACAAACACT
    GACAAAGCCTTTGTTGGGGTGTACATTGACTTTAATCCAACAGACAGCAGAAATCCTGCT
    GATTATCGCTGGACAAGATGGAAAGGTCGTGATGGCGCAAATGGCGTGGCAGGTAGGGCT
    GGTGCAGATGGTAGGACATCCTATTTCCATATAGCATACGCAGCAAGTGCAGACGGATCA
    CGCGAATTTAGTTTAGAGGATAATCGCCAGCAATATATGGGCTATTATTCCGATTTTACC
    GCAGCAGATAGTAGAGATCGAACTAAGTATAAATGGTTTGACCGACTAGCTAATGTTCAA
    GTGGGTTCCCAGAACTTGCTTAGAAATACTGCAACTCTTCCTATTAAAAATGGATTAGAC
    GGTACCTGGCGGAGTACGTCAGGTGGTAACGGAGTAGCGGAACCTGTTACCTTGGATAAA
    TATCCTGTACCTGGAATCCTAAAAGGTGTTCGAGTTAAAAACAACACCAACGGGGGTAAT
    AAGGACCTTAGCCAGATTATTAACTTAGTTATAGGTCAACGTTATACAATATCCTGCTGG
    GCTCGTGTAAGCTCTACAAGTGATCGATCTACTGTGAACCTACTAGTAAGGTCCTGGACA
    GTGAACGATACTAATAGGATACTTTTTAAGGCTATAAGTAATAAGACTTGGGTTAAGTAC
    AGTCTTTCCTTCACTGCGGACGCTGAGAAAAATTCAATTCAGTTCGGTCAAAACGGACCA
    GGTAATATTGAAATCTGTGGAATGAAATTAGAACTCGGTAATGTAGCCACTGATTGGTCC
    TTATCCGTAGAAGACATTCAATCTCAGTTAGACGGAAAAGCTGACCAAAAGCTAACTCAA
    CAACAATTGACGGCCCTAACTGAAAAGGCTCAGCTACACGACGCAGAGTTGAAAGCTAAG
    GCTACGATGGAACAATTAAGTGATTTAGAAAAAGCATATAATGCCTTTGTGAAATCAAAT
    GCAGATAGTCGAAAAAAATCTGAGTCTGATTTAGTTGAAGCAGGTAGAAGAATTGATTTG
    CTGACGACACAATTTGGAGGATTAGCAGAGCTTAAAACATTCATTGATACTTACATGAAA
    AGCACAAATGAGGGCTTGATTATAGGTAAGAATGATACAAGCTCTACTATTAAGGTATCA
    AGTGATAGAATATCCATGTTTTCTGCAGGTAAGGAAGTTATGTACATTTCGCAAGGTGTA
    ATAAATATTGATAATGGTATTTTTACTGCATCAATTCAAATTGGACGTTTTAGAACAGAA
    CAGTATCATCTTAACAAAGATGTGAATGTCATACGATATATAGGAGGTTAA
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⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: MYY_RS00490
  • symbol: MYY_RS00490
  • description: phage tail protein
  • length: 2156
  • theoretical pI: 9.16914
  • theoretical MW: 235645
  • GRAVY: -0.772495

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Energy metabolism Amino acids and amines L-serine dehydratase, iron-sulfur-dependent, beta subunit (TIGR00719; EC 4.3.1.17; HMM-score: 24.4)
    Metabolism Energy metabolism Glycolysis/gluconeogenesis L-serine dehydratase, iron-sulfur-dependent, beta subunit (TIGR00719; EC 4.3.1.17; HMM-score: 24.4)
  • TheSEED:
  • PFAM:
    no clan defined Collagen; Collagen triple helix repeat (20 copies) (PF01391; HMM-score: 164.9)
    and 3 more
    SH3DP; SH3 fold domain associated with phage DNA polymerases (PF20287; HMM-score: 26.1)
    GBD (CL0202) DUF642; Protein of unknown function (DUF642) (PF04862; HMM-score: 16.4)
    no clan defined Auxin_resp; Auxin response factor (PF06507; HMM-score: 15.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.006881
    • TAT(Tat/SPI): 0.000672
    • LIPO(Sec/SPII): 0.000956
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_053039873 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MLLTIHDANLQKVAFIDNEKQGTLNYYDDTWTRSLATGSSTFEFTVFKKAVKSDLPLAKAYHHLNEHAFVSFKYKGKSFVFNIIIVEENEQTIKCYCENLNLELINELANPYKSNKAMTFKEYCEAMDLLNYTHLSIGINEISDYKRTLEWEGQETKLARLLSLAKRFDAEIEFDTQLNADSTIKKFSVNVYHENDDNHQGVGRVRNDVIVKYGKNIHSITRKVDKTGIFNTIRPTGKMPTVEEEPSGDKGSKSETVKNADGSTTKTTISTASDGTKSKTIVHTKVTKLADKTRITTTTTTRSDGSIEQTVTTSKKGGASTSETKVLKKPNPKEKTNTTEDVLTIEGLDEWEVKNEKGIVEFYQRGQALYAPISMQLYPSTFTHSTGELDQWTRKDFHFETDEPNELRRLGYLKLKKYCYPAITYEVDGFVDADIGDTVKVHDDGFAPLLMIQARVTDQKISFTNPVRNKTIFDNFKALENKLSADIQSAFERLFEAAKPYTIKLSTDNGVIFKNQIGQSLVTPTLYKGGKPVVVGVTWRWALDGEVTTGMTYLVRGSNVTDTVTLTVAAYIGNKEVAVDEISLVNVADGKLGTPGTPGRDGRTPYVHTAWANNATGTDGFSLDSSINKLYIGIYTDFEPNDSTDPKKYKWAKVKGEKGEKGDKGEPGQRGLDGLQGARGEQGLPGRNGADGRTQYTHIAYSNSADGTKDFSVSASDRAYIGMYVDFNSADSNTPSDYNWTLVKGADGANGVAGKAGTDGRTPYLHIAYATSNNGSQGFSTTDSTNKTYIGTYTDYTQADSTDYRVYKWTLIKGADGTGISNVTNYYLATTVSTGITRTSAGWTTTPQPITSDKRYLWNYRVELYTNGTSKTTEPTVIGVHGEKGERGLQGLQGLQGARGEQGIPGPRGADGRTQYTHMAYADNATGGGFSQTNTDKAFVGVYIDFNPTDSRNPADYRWTRWKGRDGANGVAGRAGADGRTPYLHIAYATSNNGSQGFSTTDSTNKTYIGTYTDYTQADSTDPKKYKWAKVKGDKGEKGDKGERGLQGLQGLQGARGEQGIPGPRGADGRTQYTHMAYADNATGGGFSQTNTDKAFVGVYIDFNPTDSRNPADYRWTRWKGRDGANGVAGRAGADGRTPYLHIAYATSNNGSQGFSTTDSTNKTYIGTYTDYTQADSTDPKKYKWAKVKGDKGEKGDKGERGLQGLQGLQGARGEQGIPGPRGADGRTQYTHMAYADNATGGGFSQTNTDKAFVGVYIDFNPTDSRNPADYRWTRWKGRDGANGVAGRAGADGRTPYLHIAYATSNNGSQGFSTTDSTNKTYIGTYTDYTQADSTDPKKYKWAKVKGDKGEKGDKGERGLQGLQGLQGARGEQGIPGPRGADGRTQYTHMAYADNATGGGFSQTNTDKAFVGVYIDFNPTDSRNPADYRWTRWKGRDGANGVAGRAGADGRTPYLHIAYATSNNGSQGFSTTDSTNKTYIGTYTDYTQADSTDPKKYKWAKVKGDKGEKGDKGERGLQGLQGLQGARGEQGIPGPRGADGRTQYTHMAYADNATGGGFSQTNTDKAFVGVYIDFNPTDSRNPADYRWTRWKGRDGANGVAGRAGADGRTPYLHIAYATSNNGSQGFSTTDSTNKTYIGTYTDYTQADSTDPKKYKWAKVKGDKGEKGDKGERGLQGLQGLQGARGEQGIPGPRGADGRTQYTHMAYADNATGGGFSQTNTDKAFVGVYIDFNPTDSRNPADYRWTRWKGRDGANGVAGRAGADGRTSYFHIAYAASADGSREFSLEDNRQQYMGYYSDFTAADSRDRTKYKWFDRLANVQVGSQNLLRNTATLPIKNGLDGTWRSTSGGNGVAEPVTLDKYPVPGILKGVRVKNNTNGGNKDLSQIINLVIGQRYTISCWARVSSTSDRSTVNLLVRSWTVNDTNRILFKAISNKTWVKYSLSFTADAEKNSIQFGQNGPGNIEICGMKLELGNVATDWSLSVEDIQSQLDGKADQKLTQQQLTALTEKAQLHDAELKAKATMEQLSDLEKAYNAFVKSNADSRKKSESDLVEAGRRIDLLTTQFGGLAELKTFIDTYMKSTNEGLIIGKNDTSSTIKVSSDRISMFSAGKEVMYISQGVINIDNGIFTASIQIGRFRTEQYHLNKDVNVIRYIGG

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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