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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 04-FEB-2016
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae INV200
- locus tag: SPNINV200_06250 [new locus tag: SPNINV200_RS11550 ]
- pan locus tag?: PNEUPAN001651000
- symbol: SPNINV200_06250
- pan gene symbol?: glnH3
- synonym:
- product: putative periplasmic solute-binding transport protein (pseudogene)
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPNINV200_06250 [new locus tag: SPNINV200_RS11550 ]
- symbol: SPNINV200_06250
- product: putative periplasmic solute-binding transport protein (pseudogene)
- replicon: chromosome
- strand: -
- coordinates: join(637998..638657,638722..638826)
- length: 765
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: FQ312029 join(637998..638657,638722..638826) NCBI
- BioCyc: see SPNINV200_RS11550
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0615 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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721TTGCCTTTGCCCTTATCTTTATCACTGCTTGTAGCTCAGGTGGAAACGCTGGTTCATCCT
CTGGAAAAACAACTGCCAAAGCTCGCACTATCGATGAAATCAAAATGGTTCTTACCAAGG
CTACGCTACGATATTGAACTAGGGAACCAACTAGCTCAAGACCTTGGTGTCAAGGTTAAA
TACATTTCAGTCGATGCTGCCAACCGTGCGGAATACTTGATTTCAAACAAGGTAGATATT
ACTCTTGCTAACTTTACAGTAACTGACGAACGTAAGAAACAAGTTGATTTTGCCCTTCCA
TATATGAAAGTTTCTCTGGGTGTCGTATCACCTAAGACTGGTCTCATTACAGACGTCAAA
CAACTTGAAGGTAAAACCTTAATTGTCACAAAAGGAACGACTGCTGAGACTTATTTTGAA
AAGAATCATCCAGAAATCAAACTCCAAAAATACGACCAATACAGTGACTCTTACCAAGCT
CTTCTTGACGGACGTGGAGATGCCTTTTCAACTGACAATACGGAAGTTCTAGCTTGGGCA
CTTGAAAATAAAGGATTTGAAGTAGGAATTACTTCCCTCGGTGATCCCGATACCATTGCG
GCAGCAGTTCAAAAAGGCAACCAAGAATTGCTAGACTTCATCAATAAAGATATTGAAAAA
TTAGGCAAGGAAAACTTCTTCCACAAGGCCTATGAAAAAACACTTCACCCAACCTACGGT
GACGCTGCTAAAGCAGATGACCTGGTTGTTGAAGGTGGCCATTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPNINV200_06250 [new locus tag: SPNINV200_RS11550 ]
- symbol: SPNINV200_06250
- description: putative periplasmic solute-binding transport protein (pseudogene)
- length: 254
- theoretical pI: 5.41043
- theoretical MW: 28275.1
- GRAVY: -0.285827
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Amino acids, peptides and amines lysine-arginine-ornithine-binding periplasmic protein (TIGR01096; HMM-score: 101.9)and 2 moreextracellular substrate-binding orphan protein, GRRM family (TIGR04262; HMM-score: 44.1)Transport and binding proteins Other ABC transporter, substrate-binding protein, aliphatic sulfonates family (TIGR01728; HMM-score: 13)
- TheSEED :
- ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines)
- PFAM: PBP (CL0177) SBP_bac_3; Bacterial extracellular solute-binding proteins, family 3 (PF00497; HMM-score: 138.1)and 4 moreLig_chan-Glu_bd; Ligated ion channel L-glutamate- and glycine-binding site (PF10613; HMM-score: 29.2)Hybrid (CL0105) Biotin_lipoyl; Biotin-requiring enzyme (PF00364; HMM-score: 14.4)PBP (CL0177) OpuAC; Substrate binding domain of ABC-type glycine betaine transport system (PF04069; HMM-score: 14.3)NMT1; NMT1/THI5 like (PF09084; HMM-score: 14.2)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.082241
- TAT(Tat/SPI): 0.003093
- LIPO(Sec/SPII): 0.020606
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: CBW34258 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MPLPLSLSLLVAQVETLVHPLEKQLPKLALSMKSKWFLPRLRYDIELGNQLAQDLGVKVKYISVDAANRAEYLISNKVDITLANFTVTDERKKQVDFALPYMKVSLGVVSPKTGLITDVKQLEGKTLIVTKGTTAETYFEKNHPEIKLQKYDQYSDSYQALLDGRGDAFSTDNTEVLAWALENKGFEVGITSLGDPDTIAAAVQKGNQELLDFINKDIEKLGKENFFHKAYEKTLHPTYGDAAKADDLVVEGGH
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0615 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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