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serotype 1

NCBI: 04-FEB-2016

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae INV200
  • locus tag: SPNINV200_08700 [new locus tag: SPNINV200_RS04665 ]
  • pan locus tag?: PNEUPAN001943000
  • symbol: comEC
  • pan gene symbol?: comEC
  • synonym: celB
  • product: putative competence protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPNINV200_08700 [new locus tag: SPNINV200_RS04665 ]
  • symbol: comEC
  • product: putative competence protein
  • replicon: chromosome
  • strand: +
  • coordinates: 881065..882747
  • length: 1683
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    ATGTTGCAGTGGATTAAAAATTTCCCCCTTCCCCTAATCTATCTGAGTTTTCTATTGCTC
    TGGCTTTACTACGCTATTTTCTCAGCATCCTATCTTGCTTTGTTGGGGTTCGTTTTTCTG
    CTAGTCTGTCTTTTTTTCCAATTTTCGTGGAAATCAGCTAGTAAAGTTCTACTGCTTTGC
    GGAATCTTTGGATTCTGGTTTCTGTTTCAAAATTGGCAACAGAGTCAAGCGAGTCAAAAC
    TTAGCGGATTCTGTTGAGAGGGTGCGGATTTTGCCTGACACTATTAAGGTCAATGGTGAC
    AGTCTATCCTTTCGTGGCAAGTCTGATGGACGCATTTTTCAAGTCTACCATAAACTCCAG
    TCTGAGGAAGAAAAAGAAGCCTTTCAAACATTGACAGACCTTTATAATATAGAACTAGAA
    GGGAAGCTTTCGGAGCCAGAAGGGCAGAGGAATTTTGGTGGATTTGACTACCAAGCCTAT
    CTGAAGACTCAGGGAATTTATCAAACTCTCAATATCAAAAAAATCCAGTCACTTCAAAAG
    GTTGGCAGTTGGGATATAGGAGAAAATCTATCCAGTTTACGCCGAAAGGCTGTGGTTTGG
    ATTAAGACACATTTTCCAGACCCTATGCGCAATTACATGACGGGGCTTCTATTAGGACAT
    CTGGACACAGATTTTGAGGAGATGAATGAGCTTTATTCTAGTTTAGGAATTATCCACCTT
    TTTGCCTTGTCGGGTATGCAGGTAGGCTTTTTCATGGATGGATTTAAGAAACTTCTCTTG
    CGATTGGGCTTGACCCAAGAAAAGTTGAAATGGCTGACCTATCCCTTTTCCCTTATTTAT
    ACAGGTCTGACAGGATTTTCAGCTTCGGTCATTCGCAGTCTCTTACAAAAGTTACTGGCT
    CAACATGGTGTTAAGGGCTTGGATAATTTTGCCTTGACTGTGCTTGTACTCTTTATTATC
    ATGCCCAACTTTTTCTTGACAGCAGGAGGAGTTTTGTCCTGTGCTTATGCTTTTATCTTG
    ACCATGACCAGCAAAGAAGGAGAGGGGCTTAAGGCTATTGCCAGAGAAAGTCTGGTTATT
    TCCTTGGGAATATTGCCCATTCTATCCTTCTATTTTGCGGAATTTCAACATTGGTCCATC
    CTCTTGACTTTTGTCTTTTCCTTTCTTTTTGACTTGGTCTTCTTACCGCTCTTGTCTATC
    TTATTTGCCCTTTCCTTTCTCTATCCAGTCATTCAGCTTAATTTTATTTTTGAATGGTTG
    GAGGGCATTATTCGTTTGGTCTCACAGGTGACAAGTAGACCTCTAGTCTTTGGTCAACCC
    AATGCATGTCTGTTGATACTACTATTAATTTCCTTGGCTTTAGTCTATGATTTGAGGAAA
    AACATTAAAAGGCTAGCAGTATTGAGCTTATTGATTACGGGTCTCTTTTTCCTGACCAAG
    CATCCACTGGAAAATGAAATCACCATGCTGGATGTGGGGCAAGGGGAAAGTATTTTCCTA
    CGGGATGTAACTGGGAAAACCATTCTCATAGATGTGGGCGGTAAGGCAGAATCTGATAAG
    AAAATTGAAAAATGGCAAGAAAAGGCGACGACCAGCAATGCGCAGAGAACCTTGATACCC
    TATCTTAAAAGTCGAGGAGTAGCCAAGATTGACCAGCTGATTTTGACAAATACGGAAGTG
    TGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1683

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPNINV200_08700 [new locus tag: SPNINV200_RS04665 ]
  • symbol: ComEC
  • description: putative competence protein
  • length: 560
  • theoretical pI: 8.90313
  • theoretical MW: 63756.6
  • GRAVY: 0.392321

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes DNA transformation DNA internalization-related competence protein ComEC/Rec2 (TIGR00361; HMM-score: 154.4)
    and 1 more
    Unknown function General ComEC/Rec2-related protein (TIGR00360; HMM-score: 47.7)
  • TheSEED  :
    • Late competence protein ComEC, DNA transport
    DNA Metabolism DNA uptake, competence Gram Positive Competence  Late competence protein ComEC, DNA transport
    and 1 more
    DNA Metabolism DNA uptake, competence Late competence  Late competence protein ComEC, DNA transport
  • PFAM:
    no clan defined Competence; Competence protein (PF03772; HMM-score: 114.9)
    and 2 more
    DUF4131; Domain of unknown function (DUF4131) (PF13567; HMM-score: 50.8)
    Metallo-HOrase (CL0381) Lactamase_B; Metallo-beta-lactamase superfamily (PF00753; HMM-score: 12.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 9
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0062
    • Cytoplasmic Membrane Score: 0.9823
    • Cell wall & surface Score: 0.0002
    • Extracellular Score: 0.0113
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002035
    • TAT(Tat/SPI): 0.00052
    • LIPO(Sec/SPII): 0.110156
  • predicted transmembrane helices (TMHMM): 8

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: CBW34503 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MLQWIKNFPLPLIYLSFLLLWLYYAIFSASYLALLGFVFLLVCLFFQFSWKSASKVLLLCGIFGFWFLFQNWQQSQASQNLADSVERVRILPDTIKVNGDSLSFRGKSDGRIFQVYHKLQSEEEKEAFQTLTDLYNIELEGKLSEPEGQRNFGGFDYQAYLKTQGIYQTLNIKKIQSLQKVGSWDIGENLSSLRRKAVVWIKTHFPDPMRNYMTGLLLGHLDTDFEEMNELYSSLGIIHLFALSGMQVGFFMDGFKKLLLRLGLTQEKLKWLTYPFSLIYTGLTGFSASVIRSLLQKLLAQHGVKGLDNFALTVLVLFIIMPNFFLTAGGVLSCAYAFILTMTSKEGEGLKAIARESLVISLGILPILSFYFAEFQHWSILLTFVFSFLFDLVFLPLLSILFALSFLYPVIQLNFIFEWLEGIIRLVSQVTSRPLVFGQPNACLLILLLISLALVYDLRKNIKRLAVLSLLITGLFFLTKHPLENEITMLDVGQGESIFLRDVTGKTILIDVGGKAESDKKIEKWQEKATTSNAQRTLIPYLKSRGVAKIDQLILTNTEV

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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