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SPN994038
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TCH8431/19A
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serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae P1031
  • locus tag: SPP_0833 [new locus tag: SPP_RS04085 ]
  • pan locus tag?: PNEUPAN001795000
  • symbol: SPP_0833
  • pan gene symbol?: nnrD
  • synonym:
  • product: putative YjeF homolog, C-terminus

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPP_0833 [new locus tag: SPP_RS04085 ]
  • symbol: SPP_0833
  • product: putative YjeF homolog, C-terminus
  • replicon: chromosome
  • strand: +
  • coordinates: 759521..760393
  • length: 873
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGAAAGTGATTAATCAAACCTTACTAGAAAAAGTTATTATTGAACGTTCTCGTTCAAGT
    CATAAAGGAGATTATGGTCGTCTGCTGCTGCTTGGTGGTACTTATCCTTATGGAGGTGCC
    ATCATCATGGCTGCTTTAGCAGCTGTAAAAAGCGGTGCAGGATTGGTGACCGTTGGAACG
    GACAGGGAAAATATCCCGGCTCTGCACAGCCATTTACCTGAGCCTATGGCCTTTTCTCTT
    CAAGACCAGCAATTGTTAAAAGAGCAATTGGAGAAGGCAGAAGTTATCTTGCTGGGGCCT
    GGTTTACGAGACGATGCTTCTGGAGAAAATCTAGTAAAACAGGTCTTTGTTAATTTAAGC
    CAAAATCAGATTTTGATTGTAGACGGAGGTGCCTTGACCATTCTTGCTAGGACAAGTTTG
    TCATTTCCCTCAAGCCAGCTTATCCTAACTCCTCACCAAAAAGAATGGGAAAAATTATCT
    GGAATTACGATTGAAAAGCAAAAGGAAGATGCAACGGCTAGTGTTCTGACTTCCTTCCCT
    CAAGGAACAATTTTGGTGGAGAAAGGCCCAGCTACTCGTATTTGGGAAGTTGGCCAATCT
    GATTATTACCAGTTACAGGTTGGTGGTCCTTATCAGGCGACTGGGGGAATGGGAGATACT
    CTGGCTGGGATGATCGCAGGATTTGTAGGCCAATTCCGACAGGCCAGTCTCTACGAGCGT
    GTGGCAGTAGCGACCCATCTTCATTCAGCCATAGCCCAAGAACTATCTCAAGAAAATTAT
    GTGGTCTTACCGACGGAAATCAGCAGGTATCTTCCCAAAATAATGAAAATTATTTGTCAA
    CAAGATAGGGTAAGCAAAGATAAACTTGTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    873

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPP_0833 [new locus tag: SPP_RS04085 ]
  • symbol: SPP_0833
  • description: putative YjeF homolog, C-terminus
  • length: 290
  • theoretical pI: 6.80369
  • theoretical MW: 31579.2
  • GRAVY: -0.0348276

⊟Function[edit | edit source]

  • TIGRFAM:
    Unknown function General YjeF family C-terminal domain (TIGR00196; HMM-score: 167.8)
    and 1 more
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Thiamine hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase (TIGR00097; EC 2.7.1.49,2.7.4.7; HMM-score: 16.3)
  • TheSEED  :
    • ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136)
    Cell Wall and Capsule Cell Wall and Capsule - no subcategory YjeE  NAD(P)HX dehydratase
  • PFAM:
    Ribokinase (CL0118) Carb_kinase; Carbohydrate kinase (PF01256; HMM-score: 196)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helix: 1
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.11252
    • TAT(Tat/SPI): 0.036232
    • LIPO(Sec/SPII): 0.006962
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ACO21238 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKVINQTLLEKVIIERSRSSHKGDYGRLLLLGGTYPYGGAIIMAALAAVKSGAGLVTVGTDRENIPALHSHLPEPMAFSLQDQQLLKEQLEKAEVILLGPGLRDDASGENLVKQVFVNLSQNQILIVDGGALTILARTSLSFPSSQLILTPHQKEWEKLSGITIEKQKEDATASVLTSFPQGTILVEKGPATRIWEVGQSDYYQLQVGGPYQATGGMGDTLAGMIAGFVGQFRQASLYERVAVATHLHSAIAQELSQENYVVLPTEISRYLPKIMKIICQQDRVSKDKLV

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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