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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 08-SEP-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae BM6001
  • locus tag: ODS73_RS11765 [old locus tag: ODS73_11755 ]
  • pan locus tag?: PNEUPAN003887000
  • symbol: pspC
  • pan gene symbol?: pspC
  • synonym: cbpA
  • product: pneumococcal surface protein PspC, choline-binding form

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: ODS73_RS11765 [old locus tag: ODS73_11755 ]
  • symbol: pspC
  • product: pneumococcal surface protein PspC, choline-binding form
  • replicon: chromosome
  • strand: -
  • coordinates: 2243070..2245241
  • length: 2172
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NZ_CP107038 (2243070..2245241) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_2017 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    ATGTTTGCATCAAAAAGCGAAAGAAAAGTACATTATTCAATTCGTAAATTTAGTATTGGA
    GTAGCTAGTGTAGTAGTTGCCAGTCTTGTTATGGGAAGTGTGGTTCATGCGACAGAGAAC
    GAAGGAATTACCCAAGTAGTCACTTCTTCTAATATGGAAAATAAAAGTCAGACAGAACAT
    AGGAAAGCTGCTGAACAAGGAGAACAACATAGAAAAATCGATTTAAAACGAGATGAGGTA
    AAGAAAGCGTTCGATGAAGTCGATGAATATATAAAAAAAATGTTGAGTGAGATCCAATTA
    GATAAAAGAAAACATACCCAAAATTTCGCCTTAAACCTAAAGTTGAGCAGAATTAAAACG
    GAGTATTTGTATAAATTAAAAGTTAATGTTTTAGAAGAAAAGTCGAAAGCTGAGTTGACG
    TCAAAAACAAAAAAAGAGGTAGACGCAGCTTTTGAGAAGTTTAAAAAAGATACATTGAAA
    CTAGGAGAAAAGGTAGCAGAAGCTGAGAAGAAGGTTGAAGAAGCTAAGAAAAAAGCCAAG
    GCTCAAAAAGAAGAAGATCACCGTAACTACCCAACCAATACTTACAAAACGCTTGAACTT
    GAAATTGCTGAGTCCGATGTGAAAGTTAAAGAAGCGGAGCTTGAACTATTGAAAGAGGAA
    GCTCAAACTCGAAACGAGGACACAATTAACCAAGCAAAAGCGAAAGTTAAGAGTGAACAA
    GCTGAGGCTACAAGGTTAAAAAAAATCAAGACAGATCGTGAAGAAGCAGAAGAAGAAGTT
    AAAGATAAACCAAAGAAGCGGACAAAACGAGGAGCTCTTGGAGAGCCAGCAACACCTGAT
    AAAAAAGAAAATGATGCGAAGTCTTCAGATTCTAGCGTAGGTGAAGAAACTCTTCCAAGC
    CCATCCCTGAAACCAGGAAAAAAGGTAGCAGAAGCTGAGAAGAAGGTTGAAGAAGCTGAG
    AAAAAAGCCAAGGCTCAAAAAGAAGAAGATCGCCGTAACTACCCAACCAATACTTACAAA
    ACGCTTGAACTTGAAATTGCTGAGTCCGATGTGAAAGTTAAAGAAGCGGAGCTTGAACTA
    GTAAAAGAGGAAGCTAAGGAATCTCGAAACGAGGAAAAAATTAAGCAAGTAAAAGCGAAA
    GTTGAGAGTAAAAAAGCTGAGGCTACAAGGCTAGAAAACATCAAGACAGATCGTAAAAAA
    GCAGAAGAAGAAGCTAAACGAAAAGCAGCAGAAGAAGATAAAGTTAAAGAAAAACCAGCT
    GAACAACCACAACCAGCGCCGGCTCCTCAACCAGAAAAACCAACTGAAGAGCCTGAGAAT
    CCAGCTCCAGCACCACAACCAGAGAAGCCAGCTGAACAACCAAAAGCAGAAAAAACAGAT
    GATCAACAAGCTGAAGAAGACTATGCTCGTAGATCAGAAGAAGAATATAATCGCTTGACT
    CAACAGCAACCGCCAAAAATTGAAAAACCAGCTCCAGCACCACAACCAGAGCAACCAGCT
    CCAGCACCAAAAACAGGCTGGAAACAAGAAAACGGTATGTGGTACTTCTACAATACTGAT
    GGTTCAATGGCAACAGGATGGCTCCAAAACAATGGTTCATGGTACTACCTCAACAGCAAT
    GGCGCTATGGCGACAGGATGGCTCCAAAACAATGGTTCATGGTACTATCTAAACGCTAAT
    GGTTCAATGGCAACAGGATGGCTCCAAAACAATGGTTCATGGTACTACCTCAACGCTAAT
    GGTTCAATGGCGACAGGATGGCTCCAATACAATGGTTCATGGTACTACCTCAACGTTAAT
    GGTGATATGGCGACAGGATGGTTCCAATACAATGGTTCATGGTACTACCTCAACGCTAAT
    GGTGATATGGCGACAGGATGGCTCCAAAACAATGGTTCATGGTACTACCTAAACAGCAAT
    GGTGCTATGGTAACAGGATGGCTCCAAAACAATGGCTCATGGTACTACCTCAACGCTAAC
    GGTTCAATGGCAACAGATTGGGTGAAAGATGGAGATACCTGGTACTATCTTGAAGCATCA
    GGTGCTATGAAAGCAAGCCAATGGTTCAAAGTATCAGATAAATGGTACTATGTCAATGGC
    TCAGGTGCCCTTGCAGTCAACACAACTGTAGATAGCTATAGAGTCAATGCCAATGGTGAA
    TGGGTAAACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2172

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: ODS73_RS11765 [old locus tag: ODS73_11755 ]
  • symbol: PspC
  • description: pneumococcal surface protein PspC, choline-binding form
  • length: 723
  • theoretical pI: 6.3718
  • theoretical MW: 82188.9
  • GRAVY: -1.11079

⊟Function[edit | edit source]

  • TIGRFAM:
    glucan-binding repeat (TIGR04035; HMM-score: 63.2)
    gram-positive signal peptide, YSIRK family (TIGR01168; HMM-score: 53)
  • TheSEED: data available for D39, Hungary19A-6
  • PFAM:
    Choline_binding (CL0694) Choline_bind_3; Choline-binding repeat (PF19127; HMM-score: 212.2)
    Choline_bind_1; Putative cell wall binding repeat (PF01473; HMM-score: 189.7)
    and 4 more
    no clan defined RICH; RICH domain (PF05062; HMM-score: 95.3)
    Choline_binding (CL0694) Choline_bind_2; Choline-binding repeat (PF19085; HMM-score: 53.5)
    no clan defined YSIRK_signal; YSIRK type signal peptide (PF04650; HMM-score: 40.9)
    DUF4224; Domain of unknown function (DUF4224) (PF13986; HMM-score: 15.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Extracellular
    • Cytoplasmic Score: 0.1
    • Cytoplasmic Membrane Score: 0.14
    • Cellwall Score: 0.15
    • Extracellular Score: 9.6
    • Internal Helices: 0
  • SignalP: Signal peptide SP(Sec/SPI) length 37 aa
    • SP(Sec/SPI): 0.97796
    • TAT(Tat/SPI): 0.013367
    • LIPO(Sec/SPII): 0.002065
    • Cleavage Site: CS pos: 37-38. VHA-TE. Pr: 0.9610
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_284060585 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MFASKSERKVHYSIRKFSIGVASVVVASLVMGSVVHATENEGITQVVTSSNMENKSQTEHRKAAEQGEQHRKIDLKRDEVKKAFDEVDEYIKKMLSEIQLDKRKHTQNFALNLKLSRIKTEYLYKLKVNVLEEKSKAELTSKTKKEVDAAFEKFKKDTLKLGEKVAEAEKKVEEAKKKAKAQKEEDHRNYPTNTYKTLELEIAESDVKVKEAELELLKEEAQTRNEDTINQAKAKVKSEQAEATRLKKIKTDREEAEEEVKDKPKKRTKRGALGEPATPDKKENDAKSSDSSVGEETLPSPSLKPGKKVAEAEKKVEEAEKKAKAQKEEDRRNYPTNTYKTLELEIAESDVKVKEAELELVKEEAKESRNEEKIKQVKAKVESKKAEATRLENIKTDRKKAEEEAKRKAAEEDKVKEKPAEQPQPAPAPQPEKPTEEPENPAPAPQPEKPAEQPKAEKTDDQQAEEDYARRSEEEYNRLTQQQPPKIEKPAPAPQPEQPAPAPKTGWKQENGMWYFYNTDGSMATGWLQNNGSWYYLNSNGAMATGWLQNNGSWYYLNANGSMATGWLQNNGSWYYLNANGSMATGWLQYNGSWYYLNVNGDMATGWFQYNGSWYYLNANGDMATGWLQNNGSWYYLNSNGAMVTGWLQNNGSWYYLNANGSMATDWVKDGDTWYYLEASGAMKASQWFKVSDKWYYVNGSGALAVNTTVDSYRVNANGEWVN

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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