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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN003887000
- symbol?: pspC
- synonym: cbpA
- description?: pneumococcal surface protein PspC, choline-binding form
- pneumococcal surface protein PspC, choline-binding form
- Choline binding protein A
- choline-binding protein CbpA
- choline-binding surface protein A
- Putative endo-beta-N-acetylglucosaminidase
- surface protein PspC
- pneumococcal surface protein PspC3.14 variant, choline-binding form
- RICH domain-containing protein
- YSIRK-type signal peptide-containing protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5164847..5190137
- occurrence?: in 40% of 43 strains
⊟Orthologs[edit | edit source]
A026:
—
A66:
—
AP200:
—
INV200:
—
JJA:
—
MDRSPN001:
—
SPN034183:
—
SPN994038:
—
SPN994039:
—
SPNA45:
—
ST556:
—
Taiwan19F-14:
—
TCH8431/19A:
—
Xen35:
—
⊟Genome Viewer[edit | edit source]
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
D39 MFASKSERKVHYSIRKFSIGVASVAVASLVMGSVVHATENEGSTQAATSSNMAKTEHRKA
D39V MFASKSERKVHYSIRKFSIGVASVAVASLVMGSVVHATENEGSTQAATSSNMAKTEHRKA
Hungary19A-6 MFASKSERKVHYSIRKFSIGVASVVVASLFLGGVVHA-------EGVRSGDTPKV---TS
EF3030 MFASKSERKVHYSIRKFSIGVASVAVASLFLGGVVHA-------EGVRSENTPKV---TS
************************.****.:*.**** :.. * : .*. .:
D39 AKQVVDEYIEKMLREI--QLDRRKHTQNVALNIKLSAIKTKYLREL--NVLEEKSKDELP
D39V AKQVVDEYIEKMLREI--QLDRRKHTQNVALNIKLSAIKTKYLREL--NVLEEKSKDELP
Hungary19A-6 SGDEVESHLKKILSEIQTQLDRKRHAKTVALINKLQDIKRTYSYKL--NVLEEKPKAELT
EF3030 SGDEVDEYIKKMLSEI--QLDKRKHTHNFALNLKLSRIKTEYLYKLKVNVLEEKSKAELT
: : *:.:::*:* ** ***:::*::..** **. ** * :* ******.* **.
D39 SEIKAKLDAAFEKFKKDTLKPGEKVAEAKKKVEEAKKKAEDQKEEDRRNYPTNTYKTLEL
D39V SEIKAKLDAAFEKFKKDTLKPGEKVAEAKKKVEEAKKKAEDQKEEDRRNYPTNTYKTLEL
Hungary19A-6 SKAKAELDAAFEQFKKEP-ELTKKVAEAQKKVEEAKKKAEDQKEEDFRNYPTNTYKTIEL
EF3030 SKTKKEVDAAFEKFKKDTLKLGEKVAEAQKKVEEAKKKAKDQKEEDHRNYPTNTYKTLEL
*: * ::*****:***:. : :*****:**********:****** **********:**
D39 EIAEFDVKVKEAELELVKEEAKESRNEGTIKQAKEKVESKKAEATRLENIKTDRKKAEE-
D39V EIAEFDVKVKEAELELVKEEAKESRNEGTIKQAKEKVESKKAEATRLENIKTDRKKAEE-
Hungary19A-6 EIAESDVKVKEAELELLKEEAKEHRDEGTIKQVEEKVKSEKAEATRLEEIKTDREEAK--
EF3030 EIAESDVKVKEAELELLKEEAK-TRNEDTINQAKAKVKSEQAEATRLKKIKTDREQAEAT
**** ***********:***** *:*.**:*.: **:*::******::*****::*:
D39 --EAKRKADAKLKEA---NVATSDQGKPKGRAKRGVPGELATPDKKENDAKSSDSSVGEE
D39V --EAKRKADAKLKEA---NVATSDQGKPKGRAKRGVPGELATPDKKENDAKSSDSSVGEE
Hungary19A-6 -----RKADAKLKEAVEKNVATSEQDKLKGRRKRGVLGEPATPDKKENDAKSSDSSVGEE
EF3030 RLENIKTDREKAEEAKRKAEAEEVKDKLKRRTKRAVPGEPATPDKKENDAKSSDSSVGEE
:. * :** * . :.* * * **.* ** ********************
D39 TLPSSSLKSGKKVAEAEKKVEEAEKKAKDQKEEDRRNYPTNTYKTLDLEIAESDVKVKEA
D39V TLPSSSLKSGKKVAEAEKKVEEAEKKAKDQKEEDRRNYPTNTYKTLDLEIAESDVKVKEA
Hungary19A-6 TLPSPSLKPEKKVAEAEKKVEEAKKKAEDQKEEDRRNYPTNTYKTLELEIAESDVEVKKA
EF3030 TLPSPSLKSGKKVAEAQKKVAEAEKKAKDQKEEDRRNYPTNTYKTLDLEIAESDVKVKEA
****.***. ******:*** **:***:******************:********:**:*
D39 ELELVKEEAKEPRDEEKIKQAKAKVESKKAEATRLENIKTDRKKAEEEAKRKAAEEDKVK
D39V ELELVKEEAKEPRDEEKIKQAKAKVESKKAEATRLENIKTDRKKAEEEAKRKAAEEDKVK
Hungary19A-6 ELELVKEEAKEPQNEEKVKQAKAEVESKQAEATRLEKIKTDRKKAEEEAKRKAAEEDKVK
EF3030 ELELVKEEAKESRNEEKVKQAKAKVESKKAEATRLEKIKTDRKKA-EEAKRRAAEEDKVK
***********.::***:*****:****:*******:******** *****:********
D39 EKPAEQPQPAPATQPEK---------PAPKPEKPAEQPKAEKTDDQQAEEDYARRSEEEY
D39V EKPAEQPQPAPATQPEK---------PAPKPEKPAEQPKAEKTDDQQAEEDYARRSEEEY
Hungary19A-6 EKPAEQPQPAPAPQPEKPAPKPEKPAPAPKPENPAEQPKAEKPADQQAEEDYARRSEEEY
EF3030 EKPAEQPQPAPAPQPEKPTEEPENPAPAPKPEKPAEQPKAEKPADQQAEEDYARRSEEEY
************.**** ******:*********. ****************
D39 NRLTQQQPPKTEKPAQPSTPKTGWKQENGMWYFYNTDGSMATGWLQNNGSWYYLNANGAM
D39V NRLTQQQPPKTEKPAQPSTPKTGWKQENGMWYFYNTDGSMATGWLQNNGSWYYLNANGAM
Hungary19A-6 NRLTQQQPPKTEKPAQPSTPKTGWKQENGMWYFYNTDGSMATGWLQNNGSWYYLNSNGAM
EF3030 NRLTQQQPPKTEKPAQPSTPKTGWKQENGMWYFYNTDGSMATGWLQYNGSWYYLNANGDM
********************************************** ********:** *
D39 ATGWLQNNGSWYYLNANGSMATGWLQNNGSWYYLNANGAMATGWLQYNGSWYYLNSNGAM
D39V ATGWLQNNGSWYYLNANGSMATGWLQNNGSWYYLNANGAMATGWLQYNGSWYYLNSNGAM
Hungary19A-6 ATGWLQNNGSWYYLNANGSMATGWLQNNGSWYYLNANGSMATGWLQYNGSWYYLNANGDM
EF3030 ATGWLQNNGSWYYLNANGDMATGWLQNNGSWYYLNANGDMATGWLQNNGSWYYLNANGDM
******************.******************* ******* ********:** *
D39 ATGWLQYNGSWYYLNANGDMATGWLQNNGSWYYLNANGDMATGWLQYNGSWYYLNANGDM
D39V ATGWLQYNGSWYYLNANGDMATGWLQNNGSWYYLNANGDMATGWLQYNGSWYYLNANGDM
Hungary19A-6 ATGWLQNNGSWYYLNANGDMATGWLQNNGSWYYLNANGDMATGWLQYNGSWYYLNANGDM
EF3030 ATGWLQNNGSWYYLNANGDMATGWLQNNGSWYYLNANGDMATGWLQNNGSWYYLNANGDM
****** *************************************** *************
D39 ATGWVKDGDTWYYLEASGAMKASQWFKVSDKWYYVNGSGALAVNTTVDGYGVNANGEWVN
D39V ATGWVKDGDTWYYLEASGAMKASQWFKVSDKWYYVNGSGALAVNTTVDGYGVNANGEWVN
Hungary19A-6 ATGWVKDGDTWYYLEASGAMKASQWFKVSDKWYYVNGSGALAVNTTVDGYGVNANGEWVN
EF3030 ATGWVKDGDTWYYLEASGAMKASQWFKASDKWYYVNGSGALAVNTTVDGYGVNANGEWVN
***************************.********************************