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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 25-OCT-2019
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae NU83127
- locus tag: SPNU_0298 [new locus tag: EL277_RS01590 ]
- pan locus tag?: PNEUPAN001093000
- symbol: licR_1
- pan gene symbol?: celR
- synonym:
- product: putative licABCH operon regulator
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPNU_0298 [new locus tag: EL277_RS01590 ]
- symbol: licR_1
- product: putative licABCH operon regulator
- replicon: chromosome
- strand: +
- coordinates: 289819..291792
- length: 1974
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: AP018936 (289819..291792) NCBI
- BioCyc: see EL277_RS01590
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0280 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1921GTGTTAAACATTAAAGAGAAAGATATCCTTCAATTTTTAATAAAAAATAAGGAACGTTTT
GTTACAAGCAAAGAACTGGCAGAATATTTATCCTGTTCAGATAGAACTGTCCGTAATGTA
CTGAAATTAATTGAGAAGACAATGATTATTCAAGGAGTCCGGTTGATTTCAAAACAAGGT
CAAGGGTATCAAATATTTTTTGAGAATCAAGGCGCTTACCAGGAGTTTAGACAAACTTAT
GAACTGGAAGAAGACTATACGAAAACTGCGGTTTCAAAAGGTGATGATCGTTTAGTATTT
ATCTTAAATAAATTATTATTTGAGCAAGTTCCAGTTCTTTTTGATGATTTAGCTGATGAA
CTTTACGTTAGCCGTTCAACATTATCTCATGATTTCAGAAAGATACGAGTGATGTTATCA
GAGTATAATTTGTCCATTGAGAGTAGGGCGAATAAAGGAGTTTATGTCTCAGGCGAGGAA
CGTGATAAACGACGTTTTATCATAAATTATTTCCTAGAGAATCAATTTTTTAAAACAATA
CATTGCTATGTAAAATTTAACTTTTTTGATCAAACTGTTCCATTAGAAGAATTTGCTAGA
ATTGTTTTGGATGAATGCCAAGAGGCCAACCTAAAACTATCTGATTTTGTACTACAGAAT
TTAGTAGTTCACATAGCATTGTCTGTGATTCGTTTAAAATCCGGATTTGAAATAAAAAAT
ATAGACTGTCAGATGACTGATGATGCAATAGAGAGAAAGGTTGCCCAAAGAATTCTTTCT
AAAGTAAGAGAAGTAACAAATCAGGAATTTCCAGTTCAGGAAATAGACTACATTACTTTG
CATTTGTTAGCTAAGAGTCAACAATGTCAAAAAAATCAGAAGAATATTTCTGAAGAAGTT
TTAAAAAAATCTTTATTTAAAACATTTCAGAATTTAGGATTAGATGATATGTATAACTTT
TCTTCAGATTTCCAACTAATTGAAGGATTGATAACTCATCTAATGACACTACAAGTACGT
TTAGAAAGCCGGATTACCTTAAATAACCCTTTGGTAGATGAAATTAAACAGAATTATAGT
GATATATTCTTTATGACTAGAGAAATTCTTGCAAATATGGACAAGTTCTTGGAGTGGACA
ATATCAGATGATGAAGTAGCATATGTAAGTCTTCACTTTTTAGCTGCTATGGAACGTAGC
AAAGAGAGTACTAAGTTTAATATTCTTGCTATTTGTGCAACAGGATTTGGTGCAGCCCAA
ATGTTAAGAAATCGTTTGGAAACGGAGTTTGGGAAGCGAGTAGAAGTTGTTGATGTAATA
GGCTACTATGAATTGAATCAAGAAAAACTTAAAGGAATAGATTTTATAGTGTCAGCTGTT
GATTTATCAAATCTATATTTTCAAATCCCAGTTTTTAAAGTTAGTGTGTTTCTTAAAAGT
GATGAGATGGAAATGATTAGAAAAGCTATGGATCAGATGCAAGTTTCTAGTTATGTACAA
TCATCAAAGATTAACAAATTTGAAAACAACGGCTTTAGACAGTATTTTAGTAAAGAAAAT
TTTTTAATATGTACTGAATCAGACAAGGTAAATTTACTTGAAAAGATGGTTGAGGGTTTA
TCTGTTGGTGAATCAAATGAGTTTGAACAATCTTTACTTTATGGAATTAAACAGCGCGAA
GAATTAAGTTCAGTTGTTTTTTCTGAAAAAATTGCAGTTCCGCATCCTATTCAGCCCTTT
GGTACAGAGGGAAAGGTTTCGGTTGCAATTTGTAAAGATTCGTTACTCTGGGATAATCAA
AGTTCACATGTCCAGCTAGTATTTCTTCTATCTCCATCAATATATGGGAACGAAGGTTTA
GCAACTGTGACTAAAAAGATAGTCTCTCTGACAGAGAATGATGAATTGCAAAATCAGCTA
ATATCTTGCAATAACTTTGAAGATTTTATTAACATATTTGAGAAGATAAAATAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPNU_0298 [new locus tag: EL277_RS01590 ]
- symbol: LicR_1
- description: putative licABCH operon regulator
- length: 657
- theoretical pI: 5.00373
- theoretical MW: 76294
- GRAVY: -0.200609
⊟Function[edit | edit source]
- ⊞TIGRFAM: Transport and binding proteins Carbohydrates, organic alcohols, and acids PTS system, fructose subfamily, IIA component (TIGR00848; EC 2.7.1.69; HMM-score: 34.2)Signal transduction PTS PTS system, fructose subfamily, IIA component (TIGR00848; EC 2.7.1.69; HMM-score: 34.2)and 6 more
- TheSEED: data available for D39, TIGR4
- ⊞PFAM: PRD (CL0166) PRD; PRD domain (PF00874; HMM-score: 126.5)and 22 more
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
- genes regulated by CelR*, TF important in Cellobiose utilization: in TIGR4
⊟Localization[edit | edit source]
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: BBG34189 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MLNIKEKDILQFLIKNKERFVTSKELAEYLSCSDRTVRNVLKLIEKTMIIQGVRLISKQGQGYQIFFENQGAYQEFRQTYELEEDYTKTAVSKGDDRLVFILNKLLFEQVPVLFDDLADELYVSRSTLSHDFRKIRVMLSEYNLSIESRANKGVYVSGEERDKRRFIINYFLENQFFKTIHCYVKFNFFDQTVPLEEFARIVLDECQEANLKLSDFVLQNLVVHIALSVIRLKSGFEIKNIDCQMTDDAIERKVAQRILSKVREVTNQEFPVQEIDYITLHLLAKSQQCQKNQKNISEEVLKKSLFKTFQNLGLDDMYNFSSDFQLIEGLITHLMTLQVRLESRITLNNPLVDEIKQNYSDIFFMTREILANMDKFLEWTISDDEVAYVSLHFLAAMERSKESTKFNILAICATGFGAAQMLRNRLETEFGKRVEVVDVIGYYELNQEKLKGIDFIVSAVDLSNLYFQIPVFKVSVFLKSDEMEMIRKAMDQMQVSSYVQSSKINKFENNGFRQYFSKENFLICTESDKVNLLEKMVEGLSVGESNEFEQSLLYGIKQREELSSVVFSEKIAVPHPIQPFGTEGKVSVAICKDSLLWDNQSSHVQLVFLLSPSIYGNEGLATVTKKIVSLTENDELQNQLISCNNFEDFINIFEKIK
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0280 PneumoExpress