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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 31-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae TIGR4
- locus tag: SP_1070 [new locus tag: SP_RS05290 ]
- pan locus tag?: PNEUPAN002207000
- symbol: SP_1070
- pan gene symbol?: trpY
- synonym:
- product: conserved hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SP_1070 [new locus tag: SP_RS05290 ]
- symbol: SP_1070
- product: conserved hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 1006709..1007575
- length: 867
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: AE005672 (1006709..1007575) NCBI
- BioCyc:
- MicrobesOnline: 116542 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_0955 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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841ATGATTGTTTCCATTATTTCTCAAGGATTTGTCTGGGCTATTCTAGGTCTGGGAATCTTT
ATGACATTTAGGATTTTAAACTTTCCAGATATGACGACAGAAGGTTCCTTCCCTCTTGGG
GGAGCTGTTGCTGTCACTTTGATAACCAAAGGCGTGAACCCATTTTTAGCGACACTTGTT
GCTGTAGGAGCAGGTTGTTTGGCTGGAATGGCAGCAGGCCTTCTTTATACAAAAGGGAAG
ATCCCAACCTTGCTCTCAGGGATTTTGGTGATGACTTCTTGTCACTCAATCATGCTCTTG
ATTATGGGACGTGCGAATTTAGGCCTGCTTGGAACCAAGCAAATTCAGGATGTTTTGCCT
TTTGATTCGGATTTGAATCAACTCTTGACAGGTCTCATCTTTGTGAGTATTGTTATTGCT
CTCATGCTCTTTTTCTTGGACACTAAACTCGGACAAGCCTATATTGCTACAGGGGATAAT
CCTGATATGGCTAGAAGTTTCGGGATTCATACTGGACGCATGGAGCTCATGGGCTTGGTC
TTATCAAATGGTGTGATTGCCCTTGCAGGTGCCCTCATTGCTCAGCAAGAAGGTTATGCC
GATGTGTCTCGAGGGATCGGGGTTATCGTTGTGGGGCTTGCAAGTTTGATTATTGGAGAA
GTTATTTTCAAGAGTTTGAGCTTGGCAGAGCGTTTGGTTACTATCGTTGTAGGTTCTATC
GCTTATCAATTTTTAGTGTGGGCAGTTATCGCACTTGGCTTTAATACAAGTTACCTTCGT
TTATACAGTGCCTTGATTTTAGCAGTCTGCCTCATGATTCCAACATTTAAGCAAACAATC
TTGAAAGGAGCCAAGTTAAGCAAATGA60
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867
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SP_1070 [new locus tag: SP_RS05290 ]
- symbol: SP_1070
- description: conserved hypothetical protein
- length: 288
- theoretical pI: 9.13293
- theoretical MW: 30419.4
- GRAVY: 1.01562
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Amino acids, peptides and amines urea ABC transporter, permease protein UrtB (TIGR03409; HMM-score: 18.1)urea ABC transporter, permease protein UrtB (TIGR03622; HMM-score: 14.7)
- TheSEED :
- Predicted ABC transporter for tryptophane, permease protein TrpY
- PFAM: Membrane_trans (CL0142) BPD_transp_2; Branched-chain amino acid transport system / permease component (PF02653; HMM-score: 85.1)and 1 moreno clan defined CNNM; Cyclin M transmembrane N-terminal domain (PF01595; HMM-score: 8.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 8
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0.9996
- Cell wall & surface Score: 0
- Extracellular Score: 0.0003
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.015435
- TAT(Tat/SPI): 0.000231
- LIPO(Sec/SPII): 0.004405
- predicted transmembrane helices (TMHMM): 8
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MIVSIISQGFVWAILGLGIFMTFRILNFPDMTTEGSFPLGGAVAVTLITKGVNPFLATLVAVGAGCLAGMAAGLLYTKGKIPTLLSGILVMTSCHSIMLLIMGRANLGLLGTKQIQDVLPFDSDLNQLLTGLIFVSIVIALMLFFLDTKLGQAYIATGDNPDMARSFGIHTGRMELMGLVLSNGVIALAGALIAQQEGYADVSRGIGVIVVGLASLIIGEVIFKSLSLAERLVTIVVGSIAYQFLVWAVIALGFNTSYLRLYSALILAVCLMIPTFKQTILKGAKLSK
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator: T-box(Trp) (transcription antitermination) regulon
T-box(Trp) (RNA) important in Amino acid metabolism; RegPrecise
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0955 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ 1.0 1.1 Indu Warrier, Nikhil Ram-Mohan, Zeyu Zhu, Ariana Hazery, Haley Echlin, Jason Rosch, Michelle M Meyer, Tim van Opijnen
The Transcriptional landscape of Streptococcus pneumoniae TIGR4 reveals a complex operon architecture and abundant riboregulation critical for growth and virulence.
PLoS Pathog: 2018, 14(12);e1007461
[PubMed:30517198] [WorldCat.org] [DOI] (I e)