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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae TIGR4
  • locus tag: SP_1076 [new locus tag: SP_RS05320 ]
  • pan locus tag?: PNEUPAN002214000
  • symbol: SP_1076
  • pan gene symbol?: lafA
  • synonym:
  • product: glycosyl transferase, group 1

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SP_1076 [new locus tag: SP_RS05320 ]
  • symbol: SP_1076
  • product: glycosyl transferase, group 1
  • replicon: chromosome
  • strand: +
  • coordinates: 1012809..1014134
  • length: 1326
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGCGAATTGGTTTATTTACAGATACCTATTTTCCTCAGGTTTCTGGTGTTGCGACCAGT
    ATTCGAACCTTGAAAACAGAACTTGAAAAGCAGGGACATGCTGTTTTTATCTTTACGACG
    ACAGATAAGGATGTCAATCGCTACGAAGATTGGCAAATTATCCGCATTCCAAGTGTTCCT
    TTCTTTGCTTTTAAGGATCGTCGCTTTGCCTACCGAGGTTTTAGCAAGGCACTTGAAATT
    GCTAAACAGTATCAGCTAGATATTATCCATACTCAGACAGAATTTTCTCTTGGCCTGTTG
    GGGATTTGGATTGCGCGTGAATTGAAAATTCCAGTCATCCATACCTATCACACCCAGTAT
    GAAGACTATGTCCATTATATTGCTAAGGGGATGTTGATCCGGCCGAGTATGGTCAAGTAT
    CTGGTTAGAGGTTTCCTGCATGATGTGGATGGGGTTATTTGCCCTAGTGAGATTGTCCGT
    GACTTGCTATCTGATTATAAGGTCAAGGTTGAAAAACGGGTCATTCCTACTGGGATTGAA
    TTAGCCAAGTTTGAGCGTCCGGAAATCAAGCAGGAAAATTTGAAAGAACTGCGTAGTAAA
    CTAGGGATTCAAGATGGTGAAAAGACGTTGCTTAGTCTTTCGAGAATCTCCTATGAAAAA
    AATATTCAAGCAGTTTTAGCAGCCTTTGCTGATGTTCTGAAAGAGGAAGACAAGGTTAAA
    CTGGTAGTAGCTGGGGATGGCCCTTATCTGAATGACCTCAAAGAGCAAGCCCAGAACCTA
    GAGATTCAAGACTCAGTCATCTTTACAGGGATGATTGCTCCTAGTGAGACGGCTCTTTAC
    TATAAAGCGGCGGATTTCTTCATTTCGGCATCGACAAGCGAAACGCAAGGTTTGACCTAC
    TTGGAAAGCTTAGCCAGTGGAACACCTGTCATTGCTCACGGAAATCCTTATTTGAACAAC
    CTCATCAGTGATAAAATGTTTGGAACCTTGTACTATGGAGAACATGATTTGGCTGGTGCT
    ATTTTGGAAGCCCTGATTGCAACACCAGACATGAACGAGCATACCTTATCAGAGAAATTG
    TATGAGATTTCAGCTGAGAACTTTGGGAAACGAGTGCATGAGTTTTATCTGGATGCCATT
    ATTTCAAATAACTTCCAGAAAGATTTGGCTAAAGATGATACGGTCAGTCAGCGTATCTTT
    AAGACAGTTTTGTATCTTCAGCAACAGGTGGTTGCTGTACCTGTAAAAGGATCTAGACGC
    ATGTTGAAGGCTTCAAAAACACAGTTGATCAGTATGAGAGACTATTGGAAAGACCATGAA
    GAATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1326

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SP_1076 [new locus tag: SP_RS05320 ]
  • symbol: SP_1076
  • description: glycosyl transferase, group 1
  • length: 441
  • theoretical pI: 6.45194
  • theoretical MW: 50338.4
  • GRAVY: -0.199546

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Glutathione and analogs N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA (TIGR03999; EC 2.4.1.-; HMM-score: 87.3)
    Unknown function Enzymes of unknown specificity glycosyltransferase, MSMEG_0565 family (TIGR04047; HMM-score: 85)
    glycosyltransferase, GG-Bacteroidales peptide system (TIGR04157; EC 2.4.1.-; HMM-score: 85)
    D-inositol-3-phosphate glycosyltransferase (TIGR03449; EC 2.4.1.250; HMM-score: 82.9)
    PEP-CTERM/exosortase A-associated glycosyltransferase, Daro_2409 family (TIGR04063; EC 2.4.-.-; HMM-score: 80.8)
    and 10 more
    Metabolism Energy metabolism Biosynthesis and degradation of polysaccharides glycogen synthase, Corynebacterium family (TIGR02149; HMM-score: 64.3)
    sugar transferase, PEP-CTERM/EpsH1 system associated (TIGR03088; HMM-score: 58.9)
    Metabolism Energy metabolism Biosynthesis and degradation of polysaccharides glycogen/starch synthase, ADP-glucose type (TIGR02095; EC 2.4.1.21; HMM-score: 44)
    Genetic information processing Protein fate Protein modification and repair accessory Sec system glycosylation protein GtfA (TIGR02918; EC 2.4.1.-; HMM-score: 39)
    sucrose-phosphate synthase, putative, glycosyltransferase domain (TIGR02472; EC 2.4.1.14; HMM-score: 32.8)
    colanic acid biosynthesis glycosyltransferase WcaI (TIGR04007; EC 2.4.-.-; HMM-score: 21.1)
    Cellular processes Cellular processes Adaptations to atypical conditions alpha,alpha-trehalose-phosphate synthase (UDP-forming) (TIGR02400; EC 2.4.1.15; HMM-score: 16.9)
    glucosylglycerol-phosphate synthase (TIGR02398; EC 2.4.1.213; HMM-score: 13.6)
    putative glycosyltransferase, TIGR04348 family (TIGR04348; EC 2.4.1.-; HMM-score: 13.6)
    colanic acid biosynthesis glycosyltransferase WcaL (TIGR04005; EC 2.4.-.-; HMM-score: 13.3)
  • TheSEED  :
    • Glycosyltransferase LafA, responsible for the formation of Glc-DAG
    Cell Wall and Capsule Gram-Positive cell wall components Polyglycerolphosphate lipoteichoic acid biosynthesis  Glycosyltransferase LafA, responsible for the formation of Glc-DAG
  • PFAM:
    GT-B (CL0113) Glyco_transf_4; Glycosyltransferase Family 4 (PF13439; HMM-score: 116.6)
    Glycos_transf_1; Glycosyl transferases group 1 (PF00534; HMM-score: 108.2)
    and 5 more
    Glyco_trans_1_4; Glycosyl transferases group 1 (PF13692; HMM-score: 68.9)
    Glyco_trans_4_4; Glycosyl transferase 4-like domain (PF13579; HMM-score: 68.5)
    Glyco_trans_4_2; Glycosyl transferase 4-like (PF13477; HMM-score: 31.2)
    Glyco_transf_20; Glycosyltransferase family 20 (PF00982; HMM-score: 13.2)
    no clan defined Mustang; Musculoskeletal, temporally activated-embryonic nuclear protein 1 (PF15682; HMM-score: 12)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.1427
    • Cytoplasmic Membrane Score: 0.8156
    • Cell wall & surface Score: 0.0022
    • Extracellular Score: 0.0396
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008325
    • TAT(Tat/SPI): 0.000331
    • LIPO(Sec/SPII): 0.002358
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MRIGLFTDTYFPQVSGVATSIRTLKTELEKQGHAVFIFTTTDKDVNRYEDWQIIRIPSVPFFAFKDRRFAYRGFSKALEIAKQYQLDIIHTQTEFSLGLLGIWIARELKIPVIHTYHTQYEDYVHYIAKGMLIRPSMVKYLVRGFLHDVDGVICPSEIVRDLLSDYKVKVEKRVIPTGIELAKFERPEIKQENLKELRSKLGIQDGEKTLLSLSRISYEKNIQAVLAAFADVLKEEDKVKLVVAGDGPYLNDLKEQAQNLEIQDSVIFTGMIAPSETALYYKAADFFISASTSETQGLTYLESLASGTPVIAHGNPYLNNLISDKMFGTLYYGEHDLAGAILEALIATPDMNEHTLSEKLYEISAENFGKRVHEFYLDAIISNNFQKDLAKDDTVSQRIFKTVLYLQQQVVAVPVKGSRRMLKASKTQLISMRDYWKDHEE

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ 1.0 1.1 Indu Warrier, Nikhil Ram-Mohan, Zeyu Zhu, Ariana Hazery, Haley Echlin, Jason Rosch, Michelle M Meyer, Tim van Opijnen
    The Transcriptional landscape of Streptococcus pneumoniae TIGR4 reveals a complex operon architecture and abundant riboregulation critical for growth and virulence.
    PLoS Pathog: 2018, 14(12);e1007461
    [PubMed:30517198] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

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