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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 13-OCT-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae NCTC7465
  • locus tag: AT689_RS09420 [old locus tag: ERS445053_01846 ]
  • pan locus tag?: PNEUPAN001836000
  • symbol: AT689_RS09420
  • pan gene symbol?: —
  • synonym:
  • product: DUF6556 family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: AT689_RS09420 [old locus tag: ERS445053_01846 ]
  • symbol: AT689_RS09420
  • product: DUF6556 family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1779175..1779603
  • length: 429
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NZ_LN831051 (1779175..1779603) NCBI
  • BioCyc: AT689_RS09420 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_0775 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGTCTAACTATCGTAGAACTTCAAAACCAAAAACAGAACACATCAAAAAAGGCTTTACA
    GTCTTTCAAAAAACCGTTGCTACAATCGCTAGTATCCTTGGCTTGATTACCGCAAGTATC
    ACGATTATGAACGCCTTGGATAATAACAAAAATATTAAAAAAGAACCTACGACAAGCCAG
    ACGACAACCATTGTCAAAGAAATCCAAAAGGAATCCCCTAAGGAAAACACCAGTCCAACT
    AAAGAGACTAACACTAGTCAAGAAAAAACACAGCAAGAGGAAACACCAAAATCTAGCGTC
    AAGGAAGAGAAAAAAGAAGATCAGAAAACAGCAACTCAGGACTCTTCTACTCCTGCTTCA
    AGTAAACCTGCTACTGAAAACGAAAAACAGTCCAATGCGCCAACTTCAGAAAATAAAAGC
    AATCAATAG
    60
    120
    180
    240
    300
    360
    420
    429

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: AT689_RS09420 [old locus tag: ERS445053_01846 ]
  • symbol: AT689_RS09420
  • description: DUF6556 family protein
  • length: 142
  • theoretical pI: 10.104
  • theoretical MW: 15717.3
  • GRAVY: -1.28662

⊟Function[edit | edit source]

  • TIGRFAM:
    mobilome CxxCx(11)CxxC protein (TIGR04402; HMM-score: 17.4)
    and 5 more
    cobaltochelatase subunit (TIGR02442; EC 6.6.1.2; HMM-score: 13.7)
    pullulanase, extracellular (TIGR02102; HMM-score: 7.7)
    integral membrane protein (TIGR04561; HMM-score: 6.2)
    Metabolism Energy metabolism TCA cycle dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex (TIGR01347; EC 2.3.1.61; HMM-score: 5.8)
    Cellular processes Cellular processes Pathogenesis putative immunoglobulin-blocking virulence protein (TIGR04526; HMM-score: 5.4)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    no clan defined DUF6556; Family of unknown function (DUF6556) (PF20193; HMM-score: 103.8)
    and 22 more
    Pep1_7; Elicitor peptide 1-7 (PF17232; HMM-score: 21.1)
    SGNH_hydrolase (CL0264) Lipase_GDSL_3; GDSL-like Lipase/Acylhydrolase family (PF14606; HMM-score: 15)
    no clan defined DUF6479; Family of unknown function (DUF6479) (PF20087; HMM-score: 14.2)
    MFS (CL0015) BT1; BT1 family (PF03092; HMM-score: 14)
    HTH (CL0123) DUF2551; Protein of unknown function (DUF2551) (PF10826; HMM-score: 12.6)
    no clan defined MotA_ExbB; MotA/TolQ/ExbB proton channel family (PF01618; HMM-score: 11.1)
    DUF3807; Protein of unknown function (DUF3807) (PF12720; HMM-score: 11)
    DMT (CL0184) Zip; ZIP Zinc transporter (PF02535; HMM-score: 9.7)
    no clan defined DUF5427; Family of unknown function (DUF5427) (PF10310; HMM-score: 8.6)
    Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region (PF02932; HMM-score: 8.2)
    Ycf1; Ycf1 (PF05758; HMM-score: 7.9)
    GPCR_A (CL0192) SID-1_RNA_chan; dsRNA-gated channel SID-1 (PF13965; HMM-score: 7.7)
    no clan defined FAM220; FAM220 family (PF15487; HMM-score: 7.7)
    CobT; Cobalamin biosynthesis protein CobT (PF06213; HMM-score: 7.5)
    RR_TM4-6; Ryanodine Receptor TM 4-6 (PF06459; HMM-score: 7.3)
    O-anti_assembly (CL0499) O-antigen_lig; O-antigen ligase like membrane protein (PF13425; HMM-score: 6.8)
    no clan defined DDHD; DDHD domain (PF02862; HMM-score: 6.6)
    CIS_TMP; Contractile injection system tape measure protein (PF19268; HMM-score: 6.6)
    CDC45; CDC45-like protein (PF02724; HMM-score: 6)
    SLC12; Solute carrier family 12 (PF03522; HMM-score: 5.8)
    Serinc; Serine incorporator (Serinc) (PF03348; HMM-score: 5.7)
    Peptidase_AD (CL0130) Presenilin; Presenilin (PF01080; HMM-score: 5.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helix: 1
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0093
    • Cytoplasmic Membrane Score: 0.4646
    • Cell wall & surface Score: 0.3415
    • Extracellular Score: 0.1846
  • SignalP: Signal peptide SP(Sec/SPI) length 45 aa
    • SP(Sec/SPI): 0.554936
    • TAT(Tat/SPI): 0.018612
    • LIPO(Sec/SPII): 0.013371
    • Cleavage Site: CS pos: 45-46. MNA-LD. Pr: 0.4721
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000073937 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MSNYRRTSKPKTEHIKKGFTVFQKTVATIASILGLITASITIMNALDNNKNIKKEPTTSQTTTIVKEIQKESPKENTSPTKETNTSQEKTQQEETPKSSVKEEKKEDQKTATQDSSTPASSKPATENEKQSNAPTSENKSNQ

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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