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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 14-DEC-2020
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae MDRSPN001
- locus tag: MDRSPN_RS02290 [old locus tag: MDRSPN_00426 ]
- pan locus tag?: PNEUPAN001382000
- symbol: MDRSPN_RS02290
- pan gene symbol?: endoD
- synonym:
- product: bacterial Ig-like domain-containing protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS, pseudogene
- locus tag: MDRSPN_RS02290 [old locus tag: MDRSPN_00426 ]
- symbol: MDRSPN_RS02290
- product: bacterial Ig-like domain-containing protein
- replicon: chromosome
- strand: +
- coordinates: 427312..432253
- length: 4942
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NZ_AP018391 (427312..432253) NCBI
- BioCyc:
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0444 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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4921ATGAAGAATCCATTTTTTGAAAGACGTTGTCGTTACAGTATTCGTAAGTTATCAGTAGGA
GCCTGCTCGCTGATGATTGGTGCTGTTTTATTTGCTGGTCCAGCCTTGGCTGAAGAAACT
GCAGTTCCTGAAAATAGCGGAGCTAATACAGAGCTTGTTTCAGGAGAGAGTGAGCATTCG
ACCAATGAAGCTGATAAGCAGAATGAAGGGGAACATACTAGAGAAAACAAGCTAGAAAAG
GCAGAAGGAGTAGCGACAGCATCTGAAACTGCAGAAGCAGCTAGCGCAGCTAAACCAGAG
GAAAAAGCAAGTGAGGTGGTTGCAGAAACACCATCTGCAGAAGCAAAACCTAAGTCTGAC
AAGGAAACAGAAGCAAAGCCCGAAGCAACTAACCAAGGGGATGAGTCTAAGCCAGCAGCC
GAAGCTAATAAGACTGAAAAAGAAGTCCAGCCAGATGTCCCTAAAAATACAGAAAAAACA
TTAAAACCAAAGGAAATCAAATTTAATTCTTGGGAAGAATTGTTAAAATGGGAACCAGGT
GCTCGTGAAGATGATGCTATTAACCGCGGATCTGTTGTCCTCGCTTCACGTCGGACAGGT
CATTTAGTCAATGAAAAAGCTAGCAAGGAAGCAAAAGTTCAAGCCTTATCAAACACCAAT
TCTAAAGCAAAAGACCATGCTTCTGTTGGTGGAGAAGAGTTCAAGGCCTATGCTTTTGAC
TATTGGCAATATCTAGATTCAATGGTCTTCTGGGAAGGTCTCGTACCAACTCCTGACGTT
ATTGATGCAGGTCACCGTAACGGGGTTCCTGTATACGGTACACTCTTCTTCAACTGGTCT
AATAGTATTGCAGATCAAGAAAGATTTGCTGAAGCTTTGAAGCAAGACGCAGATGGTAGC
TTCCCAATTGCCCGTAAATTGGTAGACATGGCCAAGTATTATGGCTATGATGGCTATTTC
ATCAACCAAGAAACAACTGGAGATTTGGTTAAACCTCTTGGAGAAAAGATGCGCCAGTTT
ATGCTCTATAGCAAGGAATATGCTGCTAAGGTAAACCATCCAATCAAGTATTCTTGGTAC
GATGCCATGACCTATAACTATGGACGTTACCATCAAGATGGTTTGGGAGAATACAACTAC
CAATTCATGCAACCAGAAGGAGATAAGGTTCCGGCAGATAACTTCTTTGCTAACTTTAAC
TGGGATAAGGCTAAAAATGATTACACTATTGCAACTGCCAACTGGATTGGTCGTAATCCT
TATGATGTATTTGCAGGTTTGGAATTGCAACAGGGTGGTTCCTACAAGACAAAGGTTAAG
TGGAATGACATTTTAGACGAAAATGGGAAATTGCGCCTTTCTCTTGGTTTATTTGCCCCA
GATACCATTACAAGTTTAGGAAAAACTGGTGAAGATTATCATAAAAATGAAGATATCTTC
TTTACAGGTTATCAAGGAGACCCCACTGGCCAAAAACCAGGTGACAAAGATTGGTATGGT
ATTGCTAACCTAGTTGCGGACCGTACGCCAGCGGTAGGTAATACTTTTACTACTTCTTTT
AATACAGGTCATGGTAAAAAATGGTTCGTAGATGGTAAGGTTTCTAAGGATTCTGAGTGG
AATTATCGTTCAGTATCAGGTGTTCTTCCAACATGGCGCTGGTGGCAGACTTCAACAGGG
GAAAAACTTCGTGCAGAATATGATTTTACAGATGCCTATAATGGCGGAAATTCCCTTAAA
TTCTCTGGTGATGTAGCCGGTAAGACAGATCAGGATGTGAGACTTTATTCTACTAAGTTA
GAAGTAACTGAGAAGACCAAACTTCGTGTTGCCCACAAGGGAGGAAAAGGTTCTAAAGTT
TATATGGCATTCTCTACAACTCCAGACTACAAATTCGATGATGCAGATGCATGGAAAGAG
CTAACCCTTTCTGACAACTGGACAAATGAAGAATTTGATCTTAGCTCACTAGCGGGTAAA
ACCATCTATGCAGTCAAACTATTTTTCGAGCATGAAGGTGCTGTAAAAGATTATCAGTTT
AACCTAGGACAATTAACTATCTCGGACAATCACCAAGAGCCACAATCGCCGACAAGCTTT
TCTGTAGTGAAACAATCTCTTAAAAATGCCCAAGAAGCGGAAGCAGTTGTGCAATTTAAA
GGCAACAAGGATGCAGATTTCTATGAAGTTTATGAAAAAGATGGAGACAGCTGGAAATTA
CTAACTGGCTCATCTTCTACAACTATTTATCTACCAAAAGTTAGCCGCTCAGCAAGTGCT
CAGGGTACAACTCAAGAACTGAAGGTTGTAGCAGTCGGTAAAAATGGAGTTCGTTCAGAA
GCTGCAACCACAACCTTTGATTGGGGTATGACTGTAAAAGATACCAGCCTACCAAAACCA
CTAGCTGAAAATATCGTTCCAGGTGCAACAGTTATTGATAGTACTTTCCCTAAGACTGAA
GGTGGAGAAGGTATTGAAGGTATGTTGAACGGTACCATTACTAGCTTGTCAGATAAATGG
TCTTCAGCTCAGTTGAGTGGTAGTGTGGATATTCGTTTGACCAAGCCACGTACCGTTGTT
AGATGGGTCATGGATCATGCAGGAGCTGGTGGTGAGTCTGTTAACGATGGCTTGATGAAC
ACTAAAGACTTTGACCTTTATTATAAAGATGCAGATGGTGAGTGGAAGCTAGCTAAGGAA
GTCCGTGGTAACAAAGCACACGTGACAGATATCACTCTTGATAAACCAATCACTGCTCAA
GACTGGCGCTTGAATGTTGTCACTTCTGACAATGGAACTCCATGGAAGGCTATTCGTATC
TATAACTGGAAAATGTATGAAAAGCTTGATACTGAGAGTGTCAATATTCCGATGGCCAAG
GCTGCAGCCCGTTCTCTAGGCAATAACAAGGTACAAGTTGGCTTTGCAGATGTACCGGCT
GGAGCAACTATTACCGTTTATGATAATCCAAATTCTCAAACTCCGCTCGCAACCTTGAAG
AGCGAAGTTGGAGGAGACCTAGCAAGTGCACCATTGGATTTGACAAATCAATCTGGTCTT
CTTTATTATCGTACCCAGTTGCCAGGCAAGGAAATTAGTAATGTCCTAGCAGTTTCCGTT
CCAAAAGATGACAGAAGAATCAAGTCAGTCAGCCTAGAAACAGGACCTAAGAAAACAAGC
TACGCCGAAGGGGAGGATTTGGACCTTAGAGGTGGTGTTCTTCGAAGTTCAGTATGAAGG
AGGAACTGAGGACGAACTCATTCGCCTAACTCACGCAGGTGTATCAGTATCAGGTTTTGA
TACGCATCATAAGGGAGAACAGAATCTTACTCTCCAATATTTGGGACAACCAGTAAATGC
TAATTTGTCAGTGACTGTCACTGGCCAAGATGAAGCAAGTCCGAAAACTATTTTGGGAAT
TGAAGTAAGTCAGGAACCGAAAAAAGATTACCTAGTTGGTGATAGCTTAGACTTGTCTGA
AGGACGCTTTGCAGTGGCTTATAGCAATGACACCATGGAAGAACATTCCTTTACTGATGA
GGGAGTTGAAATTTCTGGTTACGATGCTCAAAAGACTGGTCGTCAAACCTTGACGCTTCG
TTACCAAGGTCATGAAGTCAACTTTGATGTTTTGGTATCTCCAAAAGCAGCATTGAACGA
TGAGTACCTCAAACAAAAATTAGCAGAAGTTGAAGCTGCTAAGAACAAGGTGGTCTATAA
CTTTGCTTCACCAGAAGTAAAAGAAGCTTTCTTGAAAGCAATTGAAGCGGCCGAACAAGT
GTTGAAAGACCATGAAACTAGCACCCAAGATCAAGTCAATGACCGACTTAATAAATTGAC
AGAAGCTCATAAAGCTCTGAATGGTCAAGAGAAATTTAAGGAAGAAAAGACAGAGCTTGA
TCGTTTAACAGGTGAGGTTCAAGAACTCTTGGCTGCCAAACCAAACCATCCTTCAGGTTC
TGCCCTAGCTCCGCTTCTTGAGAAAAACAAGGCCTTGGTTGAAAAAGTAGATTTGAGTCC
AGAAGAGCTTGCAACAGCGAAACAGAGTCTAAAAGATCTGGTTGCTTTATTGAAAGAAGA
CAAGCCAGCAGTCTTTTCTGATAGTAAAACAGGTGTTGAAGTACACTTCTCAAATAAAGA
GAAGACTGTCATCAAGGGTTTGAAAGTAGAGCGTGTTCAAGCAAGTGCTGAAGAGAAGAA
ATACTTTGCTGGAGAAGATGCTCATGTCTTTGAAATAGAAGGTTTGGATGAAAAAGGTCA
AGATGTTGATCTCTCTTACGCTTCTATTGTGAAAATCCCAATTGAAAAAGATAAGAAAGT
TAAGAAAGTATTTTTCTTACCTGAAGGCAAAGAGGCAGTAGAATTGGCTTTTGAACAAAC
GGATAGTCATGTTATCTTTACAGCACCACACTTTACTCATTATGCCTTTGTTTATGAATC
TGCTGAAAAACCACAACCTGCTAAACCAGCACCACAAAACAAAGTCCTTCCAAAACCTAC
TTATCAACCGGCTTCTGATCAACAAAAGGCTCCTAAATTGGAAGTTCAAGAGGAAAAGGT
TGCCTTTCATCGTCAAGAGCATGAAAATACTGAGATGCTAGTTGGGGAACAACGAGTCAT
CATACAGGGACGAGATGGACTGTTAAGACATGTCTTTGAAGTTGATGAAAACGGTCAGCG
TCGTCTTCGTTCAACAGAAGTCATCCAAGAAGCGATTCCAGAAATTGTTGAAATTGGAAC
AAAAGTAAAAACAGTACCAGCAGTAGTAGCTACACAGGAAAAACCAGCTCAAAATACAGC
AGTTAAATCAGAAGAAGCAAGCAAACAATTGCCAAATACAGGAACAGCTGATGCTAATGA
AGCCCTAATAGCAGGCTTAGCCAGCCTTGGTCTTGCTAGTTTAGCCTTGACCTTGAGACG
GAAAAGAGAAGATAAAGATTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: MDRSPN_RS02290 [old locus tag: MDRSPN_00426 ]
- symbol: MDRSPN_RS02290
- description: bacterial Ig-like domain-containing protein
- length:
- theoretical pI:
- theoretical MW:
- GRAVY:
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM:
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb:
- SignalP:
- predicted transmembrane helices (TMHMM):
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: see MDRSPN_00426
- UniProt:
⊟Protein sequence[edit | edit source]
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0444 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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