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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 06-FEB-2015

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae ATCC 700669
  • locus tag: SPN23F22240 [new locus tag: SPN23F_RS12760 ]
  • pan locus tag?: PNEUPAN003887000
  • symbol: cbpA
  • pan gene symbol?: pspC
  • synonym:
  • product: choline-binding surface protein A

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPN23F22240 [new locus tag: SPN23F_RS12760 ]
  • symbol: cbpA
  • product: choline-binding surface protein A
  • replicon: chromosome
  • strand: -
  • coordinates: 2170171..2172795
  • length: 2625
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    ATGTTTGCATCAAAAAACGAAAGAAAAGTACATTATTCAATTCGTAAATTTAGTATTGGA
    GTAGCTAGTGTAGCTGTTGCCAGTCTTTTTATGGGAAGTGTGGTTCATGCGACAGAGAAG
    GAGGTAACTACCCAAGTAGCCACTTCTTCTAATAAGGCAAATAAAAGTCAGACAGAACAT
    ATGAAAGCTGCTAAACAAGTCGATGAATATATAAAAAAAAAGCTCCAATTAGATAGAAGA
    AAACATACCCAAAATGTCGGCTTACTCACAAAGTTGGGCGTAATTAAAACGGAGTATTTG
    CATGGATTAAGTGTTTCAAAAAAGAAGTCGGAAGCTGAGTTGCCGTCAGAAATAAAAGCA
    AAGTTAGACGCAGCTTTTGAGCAGTTTAAAAAAGATACATTACCAACAGAACCAGGAAAA
    AAGGTAGCAGAAGCTGAGAAGAAGGTTGAAGAAGCTAAGAAAAAAGCCGAGGATCAAAAA
    GAAAAAGATCTCCGTAACTACCCAACCAATACTTACAAAACGCTTGAACTTGACATTGCT
    GAGTCCGATGTGGAAGTTAAAAAAGCGGAGCTTGAACTAGTAAAAGAGGAAGCTAAGGAA
    TCTCGAGACGAGAAAAAAATTAATCAAGCAAAAGCGAAAGTTGAGAATAAAAAAGCTGAG
    GCTACAAGGTTAAAAAACATCAAGACAGATCGTGAAAAAGCAGAAGAAGCTAAACGAAGA
    GCAGATGCTAAGTTGCAGGAAGCTAATGTAGCGACTTCAGAGCAAGATAAATCAAAGAGG
    CGGGCAAAACGAGAAGTTCTTGGAGAGCTAGCAACACCTGATAAAAAAGAAAATGATGCG
    AAGTCTTCAGATTCTAGCGTAGGTGAAGAAACTCTTACAAGCCCATCCCTGAAACCAGAA
    AAAAAGGTAGCAGAAGCTGAGAAGAAGGTTGAAGAAGCTAAGAAAAAAGCCGAGGATCAA
    AAAGAAGAAGATCGTCGTAACTACCCAACCAATACTTACAAAACGCTTGAACTTGAAATT
    GCTGAGTCCGATGTGGAAGTTAAAAAAGCGGAGCTTGAACTAGTAAAAGAGGAAGCTAAG
    GAATCTCGAGACGAGAAAAAAATTAATCAAGCAAAAGCGAAAGTTGAGAATAAAAAAGCT
    GAGGCTACAAGGTTAAAAAACATCAAGACAGATCGTGAAAAAGCAGAAGAAGCTAAACGA
    AGAGCAGATGCTAAGTTGCAGGAAGCTAATGTAGCGACTTCAGAGCAAGATAAATCAAAG
    AGGCGGGCAAAACGAGAAGTTCTTGGAGAGCTAGCAACACCTGATAAAAAAGAAAATGAT
    GCGAAGTCTTCAGATTCTAGCGTAGGTGAAGAAACTCTTACAAGCCCATCCCTGAAACCA
    GAAAAAAAGGTAGCAGAAGCTGAGAAGAAGGTTGAAGAAGCTAAGAAAAAAGCCGAGGAT
    CAAAAAGAAGAAGATCGTCGTAACTACCCAACCAATACTTACAAAACGCTTGAACTTGAA
    ATTGCTGAGTCCGATGTGGAAGTTAAAAAAGCGGAGCTTGAACTAGTAAAAGAGGAAGCT
    AAGGAATCTCGAAACGAGGAAAAAATTAAGCAAGTAAAAGCGAAAGTTGAGAGTAAAAAA
    GCTGAGGCTACAAGGCTAGAAAACATCAAGACAGATCGTAAAAAAGCAGAAGAAGAAGAA
    GCTAAACGAAGAGCAGCAGAAGAAGATAAAGTTAAAGAAAAACCAGCTGAACAACCACAA
    CCAGCGCCGGCTCCTCAACCAGAAAAACCAACTGAAGAGCCTGAGAATCCAGCTCCAGCT
    CCAGCTCCAAAACCAGAGAATCCAGCTGAAAAACCAAAAGCAGAAAAGCCAGCTGATCAA
    CAAGCTGAAGAAGACTATGCTCGTAGATCAGAAGAAGAATATAACCGCTTGACTCAACAG
    CAACCGCCAAAAGCAGAAAAACCAGCACAACCATCTACTCCAAAAACAGGCTGGAAACAA
    GAAAATGGTATGTGGTACTTCTACAATACTGATGGTTCAATGGCGACAGGATGGCTCCAA
    AACAATGGCTCATGGTACTACCTCAACAGCAATGGCGCTATGGCGACAGGATGGCTCCAA
    AACAATGGTTCATGGTACTATCTAAACGCTAATGGTTCAATGGCAACAGGATGGCTCCAA
    AACAATGGTTCATGGTACTACCTCAACGCTAATGGTTCAATGGCGACAGGATGGCTCCAA
    TACAATGGTTCATGGTACTACCTCAACGCTAATGGTGATATGGCGACAGGATGGCTCCAA
    AACAATGGCTCATGGTACTACCTAAACGCTAATGGTGATATGGCGACAGGATGGCTCCAA
    AACAATGGCTCATGGTACTACCTAAACGCTAATGGTGATATGGCGACAGGATGGCTCCAA
    TACAATGGCTCATGGTACTACCTAAACGCTAATGGTGATATGGAGACAGGTTGGGTGAAA
    GATGGAGATACCTGGTACTATCTTGAAGCATCAGGTGCTATGAAAGCAAGCCAATGGTTC
    AAAGTATCAGATAAATGGTACTATGTCAATGGCTCAGGTGCCCTTGCAGTCAACACAACT
    GTAGATGGCTATGGAGTCAATGCCAATGGTGAATGGGTAAACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2340
    2400
    2460
    2520
    2580
    2625

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPN23F22240 [new locus tag: SPN23F_RS12760 ]
  • symbol: CbpA
  • description: choline-binding surface protein A
  • length: 874
  • theoretical pI: 7.69152
  • theoretical MW: 98792.2
  • GRAVY: -1.19005

⊟Function[edit | edit source]

  • TIGRFAM:
    glucan-binding repeat (TIGR04035; HMM-score: 59.2)
    gram-positive signal peptide, YSIRK family (TIGR01168; HMM-score: 55.5)
    and 1 more
    ectoine hydroxylase (TIGR02408; EC 1.-.-.-; HMM-score: 4.9)
  • TheSEED  :
    • Choline binding protein A
    Stress Response Osmotic stress Choline and Betaine Uptake and Betaine Biosynthesis  Choline binding protein A
  • PFAM:
    Choline_binding (CL0694) Choline_bind_3; Choline-binding repeat (PF19127; HMM-score: 195.1)
    Choline_bind_1; Putative cell wall binding repeat (PF01473; HMM-score: 188.6)
    and 5 more
    no clan defined RICH; RICH domain (PF05062; HMM-score: 78.7)
    YSIRK_signal; YSIRK type signal peptide (PF04650; HMM-score: 43.8)
    Choline_binding (CL0694) Choline_bind_2; Choline-binding repeat (PF19085; HMM-score: 39.7)
    no clan defined DUF4224; Domain of unknown function (DUF4224) (PF13986; HMM-score: 14.1)
    DUF22; Domain of unknown function DUF22 (PF01629; HMM-score: 7.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Extracellular
    • Cytoplasmic Score: 0.01
    • Cytoplasmic Membrane Score: 0.09
    • Cellwall Score: 0.18
    • Extracellular Score: 9.72
    • Internal Helices: 0
  • DeepLocPro: Cell wall & surface
    • Cytoplasmic Score: 0.001
    • Cytoplasmic Membrane Score: 0.0004
    • Cell wall & surface Score: 0.9409
    • Extracellular Score: 0.0576
  • SignalP: Signal peptide SP(Sec/SPI) length 37 aa
    • SP(Sec/SPI): 0.970485
    • TAT(Tat/SPI): 0.020697
    • LIPO(Sec/SPII): 0.002399
    • Cleavage Site: CS pos: 37-38. VHA-TE. Pr: 0.9490
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: CAR69953 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MFASKNERKVHYSIRKFSIGVASVAVASLFMGSVVHATEKEVTTQVATSSNKANKSQTEHMKAAKQVDEYIKKKLQLDRRKHTQNVGLLTKLGVIKTEYLHGLSVSKKKSEAELPSEIKAKLDAAFEQFKKDTLPTEPGKKVAEAEKKVEEAKKKAEDQKEKDLRNYPTNTYKTLELDIAESDVEVKKAELELVKEEAKESRDEKKINQAKAKVENKKAEATRLKNIKTDREKAEEAKRRADAKLQEANVATSEQDKSKRRAKREVLGELATPDKKENDAKSSDSSVGEETLTSPSLKPEKKVAEAEKKVEEAKKKAEDQKEEDRRNYPTNTYKTLELEIAESDVEVKKAELELVKEEAKESRDEKKINQAKAKVENKKAEATRLKNIKTDREKAEEAKRRADAKLQEANVATSEQDKSKRRAKREVLGELATPDKKENDAKSSDSSVGEETLTSPSLKPEKKVAEAEKKVEEAKKKAEDQKEEDRRNYPTNTYKTLELEIAESDVEVKKAELELVKEEAKESRNEEKIKQVKAKVESKKAEATRLENIKTDRKKAEEEEAKRRAAEEDKVKEKPAEQPQPAPAPQPEKPTEEPENPAPAPAPKPENPAEKPKAEKPADQQAEEDYARRSEEEYNRLTQQQPPKAEKPAQPSTPKTGWKQENGMWYFYNTDGSMATGWLQNNGSWYYLNSNGAMATGWLQNNGSWYYLNANGSMATGWLQNNGSWYYLNANGSMATGWLQYNGSWYYLNANGDMATGWLQNNGSWYYLNANGDMATGWLQNNGSWYYLNANGDMATGWLQYNGSWYYLNANGDMETGWVKDGDTWYYLEASGAMKASQWFKVSDKWYYVNGSGALAVNTTVDGYGVNANGEWVN

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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