⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae AP200
- locus tag: SPAP_0630 [new locus tag: SPAP_RS03120 ]
- pan locus tag?: PNEUPAN001574000
- symbol: SPAP_0630
- pan gene symbol?: prtA
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPAP_0630 [new locus tag: SPAP_RS03120 ]
- symbol: SPAP_0630
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 593771..599614
- length: 5844
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP002121 (593771..599614) NCBI
- BioCyc: see SPAP_RS03120
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0558 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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5821ATGATGAATCATGCCAGAAAGGAAATTGGAGTTGAGGAAGCTATTGATTACCTAAAGTCT
ATCAATGCTCCGTTTGGGAAAAATTTTGATGGTAGAGGTATGGTCATTTCAAATATCGAT
ACTGGAACAGATTATAGACATAAGGCTATGAGAATCGATGATGATGCCAAAGCCTCAATG
AGATTTAAAAAAGAAGACTTAAAAGGTACTGATAAAAATTATTGGTTGAGTGATAAAATC
CCTCATGCGTTCAATTATTATAATGGTGGCAAAATCACTGTAGAAAAATATGATGATGGA
AGGGATTATTTTGACCCACATGGGATGCATATTGCAGGGATTCTTGCTGGAAATGATACT
GAACAAGATATCAAAAACTTTAACGGCATAGATGGAATTGCACCTAATGCACAAATTTTC
TCTTACAAAATGTATTCTGACGCAGGATCTGGGTTTGCGGGTGATGAAACAATGTTTCAT
GCTATTGAAGATTCTATCAAACACAACGTTGATGTTGTTTCGGTATCATCTGGTTTTACA
GGAACAGGTCTTGTAGGTGAGAAATATTGGCAAGCTATTAGGGCATTAAGAAAAGCAGGC
ATTCCAATGGTTGTCGCTACGGGTAACTATGCGACTTCTGCTTCAAGTTCTTCATGGGAT
TTAGTAGCAAATAATCATCTGAAAATGACCGACACTGGAAATGTAACACGAACTGCAGCA
CATGAGGATGCGATAGCGGTCGCTTCTGCTAAAAATCAAACAGTTGAGTTTGATAAAGTT
AACATAGGTGGAGAAAGTTTTAAATACAGAAATATAGGGGCCTTTTTCGATAAGAATAAA
ATCACAACAAATGAAGATGGAACAAAAGCTCCTAGTAAATTAAAATTTGTATATATAGGC
AAGGGGCAAGACCAAGATTTGATAGGTTTGGATCTTAGGGGCAAAATTGCAGTAATGGAT
AGAATTTATACAAAGGATTTAAAAAATGCTTTTAAAAAAGCTATGGATAAGGGTGCACGC
GCCATTATGGTTGTAAATACTGTAAATTACTACAATAGAGATAATTGGACAGAGCTTCCA
GCTATGGGATATGAAGCGGATGAAGGTACTAAAAGTCAAGTGTTTTCAATTTCAGGAGAT
GATGGTGTAAAGCTATGGAACATGATTAATCCTGATAAAAAAACTGAAGTCAAAAGAAAT
AATAAAGAAGATTTTAAAGATAAATTGGAGCAATACTATCCAATTGATATGGAAAGTTTT
AATTCCAACAAACCGAATGTAGGTGACGAAAAAGAGATTGACTTTAAGTTTGCACCTGAC
ACAGACAAAGAACTCTATAAAGAAGATATCATCGTTCCAGCAGGATCTACATCTTGGGGG
CCAAGAATAGATTTACTTTTAAAACCCGATGTTTCAGCACCTGGTAAAAATATTAAATCC
ACGCTTAATGTTATTAATGGCAAATCAACTTATGGCTATATGTCAGGAACTAGTATGGCG
ACTCCAATCGTGGCAGCTTCTACTGTTTTGATTAGACCGAAATTAAAGGAAATGCTTGAA
AGACCTGTATTGAAAAATCTTACGGGAGATGACAAAATAGATCTTACAAGTCTTACAAAA
ATTGCCCTACAAAATACTGCGCGACCTATGATGGATGCAACTTCTTGGAAAGAAAAAAGT
CAATACTTTGCATCACCTAGACAACAGGGAGCAGGCCTAATTAATGTGGCCAATGCTTTG
AGAAATGAAGTTGTAGCAACTTTCAAAAACACTGATTCTAAAGGTTTGGTAAACTCATAT
GGTTCCATTTCTCTTAAAGAAATAAAAGGTGATAAAAAATACTTTACAATCAAGCTTCAC
AATACATCAAACAGACCTTTGACTTTTAAAGTTTCAGCATCAGCGATAACTACAGATTCT
CTAACTGACAGATTAAAACTTGATGAAACATATAAAGATGAAAAATCTCCAGATGGTAAG
CAAATTGTTCCAGAAATTCACCCAGAAAAAGTCAAAGGAGCAAATATCACATTTGAGCAT
GATACTTTCACTATAGGCGCAAATTCTAGCTTTGATTTGAATGCGGTTATAAATGTTGGA
GAGGCCAAAAACAAAAATAAATTTGTAGAATCATTTATTCATTTTGAGTCAGTGGAAGAA
ATGGAAGCTCTAAACTCCAACGGGAAGAAAATAAACTTCCAACCTTCTTTGTCGATGCCT
CTAATGGGATTTGCTGGGAATTGGAACCACGAACCAATCCTTGATAAATGGGCTTGGGAA
GAAGGGTCAAGATCAAAAACACTGGGAGGTTATGATGATGATGGTAAACCGAAAATTCCA
GGAACCTTAAATAAGGGAATTGGTGGAGAACATGGTATAGATAAATTTAATCCAGCAGGA
GTTATACAAAATAGAAAAGATAAAAATACAACATCCCTGGATCAAAATCCAGAATTATTT
GCTTTCAATAACGAAGGGATCAACGCTCCATCATCAAGTGGTTCTAAGATTGCTAACATT
TATCCTTTAGATTCAAATGGAAATCCTCAAGATGCTCAACTTGAAAGAGGATTAACACCT
TCTCCACTTGTATTAAGAAGTGCAGAAGAAGGATTGATTTCAATAGTAAATACAAATAAA
GAGGGAGAAAATCAAAGAGACTTAAAAGTCATTTCGAGAGAACACTTTATTAGAGGAATT
TTAAATTCTAAAAGCAATGATGCAAAGGGAATCAAATCATCTAAACTAAAAGTTTGGGGT
GACTTGAAGTGGGATGGACTCATCTATAATCCTAGAGGTAGAGAAGAAAATGCACCAGAA
AGTAAGGATAATCAAGATCCTGCTACTAAGATAAGAGGTCAATTTGAACCGATTGCGGAA
GGTCAATATTTCTATAAATTTAAATATAGATTAACTAAAGATTACCCATGGCAGGTTTCC
TATATTCCTGTAAAAATTGATAACACCGCCCCTAAGATTGTTTCGGTTGATTTTTCAAAT
CCTGAAAAAATTAAGTTGATTACAAAGGATACTTATCATAAGGTAAAAGATCAGTATAAG
AATGAAACGCTATTTGCGAGAGATCAAAAAGAACATCCTGAAAAATTTGACGAGATTGCG
AACGAAGTTTGGTATGCTGGCGCCGCTCTTGTTAATGAAGATGGAGAGGTTGAAAAAAAT
CTTGAAGTAACTTACGCAGGTGAGGGTCAAGGAAGAAATAGAAAACTTGACAAAGACGGA
AATACCATTTATGAAATTAAAGGTGCGGGAGATTTAAGGGGAAAAATCATTGAAGTCATT
GCATTAGATGGTTCTAGCAATTTCACAAAGATTCATAGAATTAAATTTGCTAATCAGGCT
GATGAAAAGGGGATGATTTCCTATTATCTAGTAGATCCTGATCAAGATTCATCTAAATAT
CAAAAGCTTGGCGAGATTGCAGAATCTAAATTTAAAAATTTAGGAAATGGAAAAGAGGGT
AGTCTAAAAAAAGATACAACTGGGGTAGAACATCATCATCAAGAAAATGAAGAGTCTATT
AAAGAAAAATCTAGTTTTACTATTGATAGAAATATTTCAACAATTAGAGACTTTGAAAAT
AAAGACCTAAAGAAACTCATTAAAAAGAAATATAAGGAAGAAGACGACTTTGTAACTGGT
GGAAAAAGAACAGTAGAACTTGATTATAAATATGACGATAAAGGAAATATAACTGCCTAT
GAAGATGAAAGTGCTCTAGAATATGAAACTGAAAAATTTGACGAAATAAAATCAAAAATT
TATGGTGTTCTAAGCCCATCTAAAGATGGACACTTTGAAATTCTTGGAAAGATAAGCAAT
GTTTCTAAAAATGCCAAGGTATATTATGGAAATAACTATAAATTTATAGAAATCAAAGCG
ACTAAGTATGACTCACATTCAAAAACGATGATATTTGATTTATACGCTAATATTAATGAT
ATTGTAGATGGATTAGCTTTTGCTGGAGATATGAGATTATTTGTTAAAGATGACAATCAA
ATAAAAGCTGAAACTAAAATTAGAATGCCTGAAAAAAATAAGGAAACTAAAGCAGAATAT
CCGTATGTATCAAGTTATGGGAATGTAATCGAATTAGGAGAAGGAGACCTTTCAAAAAAC
AAACCAGACAATTTAACTAAAATGGAATCTGGTAAAATCTATTCTGATTCAGAAAAACAA
CAATATCTGTTAAAGGATAACATCATTCTAAGAAAAGGCTATGCACTAAAAGTGACTACC
TATAATCCTGGAAAAACGGATATGTTAGAAGGAAATGGAGTCTATAGCAAGGAAGATATA
GCAAAAATACAAAAGGCCAATCCTAATCTAAGAGTCCTTTCAGAAACAACAATTTATGCT
GATAGTAGAAATGTTGAAGATGGAAGAAGTACCCAAGCTGTATTAATGTCGGCTTTGGAC
GGCTTTAACATTATAAGGTATCAAGTGTTTACATTTAAAATGAACGATAAAGGGGAAGCT
ATCGATAAAGACGGAAATCTTGTGACAGATTCTTCTAAACTTGTATTATTTGGTAAGGAT
GATAAAGAATACACTGGAGAGGATAAGTCCAATGTAGAAGCTATAAAAGAAGATGGCTCC
ATGTTATTTATTGATACCAAACCAGTAAACCTTTCAATGGATAAGAACTACTTTAATCCA
TCTAAATTTAATAAAATTTATGTACGAAATCCAGAATTTTATTTAAGAGGTAAGATTTCT
GATAAGGGTGGTTTTAACTGGGAATTGAGAGTTAATGAATCGGTTGTAGATAATTATTTA
ATCTACGGAGATTTACACATTGATAACACTAGAGATTTTAATATTAAGCTGAATGTTAAA
GACGGTGACATCATGGACTGGGGAATGAAAGACTATAAAGCAAACGGATTTCCAGATAAG
GTAACAGATATGGATGGAAATGTTTATCTTCAAACTGGCTATAGTGATTTGAATGCTAAA
GCAGTTGGAGTCCACTATCAGTTTTTATATGATAATGTTAAACCCGAAGTAAACATTGAT
CCTAAGGGAAATACTAGTATCGAATATGCTGATGGAAAATCTGTAGTCTTTAACATCAAT
GATAAAAGAAATAATGGATTCGATGGTGAGATTCAAGAACAACATATTTATATAAATGGA
AAAGAATATACATCATTTGATGATATTAAACAAATAATAGACAAGACACTAAACATTAAG
ATTGTTGTAAAAGATTTTGCAAGAAATACAACCGTAAAAGAATTCATTTTAAATAAAGAT
ACGGGAGAGGTAAGTGAATTAAAACCTCATAGGGTAACTGTGACCATTCAAAATGGAAAA
GAAATGAGTTCAACGATAGTGTCGGAAGAAGATTTTATTTTACCTGTTTATAAGGGTGAA
TTAGAAAAAGGATACCAATTTGATGGTTGGGAAATTTCTGGTTTCGAAGGTAAAAAAGAC
GCTGGCTATGTTATTAATCTATCAAAAGATACCTTTATAAAACCTGTATTCAAGAAAATA
GAGGAGAAAAAGGAGGAAGAAAATAAACCTACTTTTGATGTATCGAAAAAGAAAGATAAC
CCACAAGTAAACCATAGTCAATTAAATGAAAGTCACAGAAAAGAGGATTTACAAAGAGAA
GAGCATTCACAAAAATCTGATTCAACTAAGGATGTTACAGCTACAGTTCTTGATAAAAAC
AATATCAGTAGTAAATCAACTACTAACAATCCTAATAAGTTGCCAAAAACTGGAACAGCA
AGCGGAGCCCAGACACTATTAGCTGCCGGAATAATGTTTATAGTAGGAATTTTTCTTGGA
TTGAAGAAAAAAAATCAAGATTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPAP_0630 [new locus tag: SPAP_RS03120 ]
- symbol: SPAP_0630
- description: hypothetical protein
- length: 1947
- theoretical pI: 6.32355
- theoretical MW: 218821
- GRAVY: -0.719209
⊟Function[edit | edit source]
- TIGRFAM: Protein fate Protein and peptide secretion and trafficking type VII secretion-associated serine protease mycosin (TIGR03921; EC 3.4.21.-; HMM-score: 64.2)Protein fate Protein modification and repair type VII secretion-associated serine protease mycosin (TIGR03921; EC 3.4.21.-; HMM-score: 64.2)and 1 moreCell envelope Other LPXTG cell wall anchor domain (TIGR01167; HMM-score: 24.1)
- TheSEED :
- C5a peptidase precursor (EC 3.4.21.-)
- PFAM: no clan defined Peptidase_S8; Subtilase family (PF00082; HMM-score: 124.3)E-set (CL0159) fn3_5; Fn3-like domain (PF06280; HMM-score: 110.8)and 3 moreno clan defined Gram_pos_anchor; LPXTG cell wall anchor motif (PF00746; HMM-score: 27.2)Leu-IlvD (CL0364) PA; PA domain (PF02225; HMM-score: 24.1)no clan defined DUF6061; Family of unknown function (DUF6061) (PF19537; HMM-score: 13.2)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cellwall
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 10
- Extracellular Score: 0
- Internal Helix: 1
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.005669
- TAT(Tat/SPI): 0.000502
- LIPO(Sec/SPII): 0.0008
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: ADM84223 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MMNHARKEIGVEEAIDYLKSINAPFGKNFDGRGMVISNIDTGTDYRHKAMRIDDDAKASMRFKKEDLKGTDKNYWLSDKIPHAFNYYNGGKITVEKYDDGRDYFDPHGMHIAGILAGNDTEQDIKNFNGIDGIAPNAQIFSYKMYSDAGSGFAGDETMFHAIEDSIKHNVDVVSVSSGFTGTGLVGEKYWQAIRALRKAGIPMVVATGNYATSASSSSWDLVANNHLKMTDTGNVTRTAAHEDAIAVASAKNQTVEFDKVNIGGESFKYRNIGAFFDKNKITTNEDGTKAPSKLKFVYIGKGQDQDLIGLDLRGKIAVMDRIYTKDLKNAFKKAMDKGARAIMVVNTVNYYNRDNWTELPAMGYEADEGTKSQVFSISGDDGVKLWNMINPDKKTEVKRNNKEDFKDKLEQYYPIDMESFNSNKPNVGDEKEIDFKFAPDTDKELYKEDIIVPAGSTSWGPRIDLLLKPDVSAPGKNIKSTLNVINGKSTYGYMSGTSMATPIVAASTVLIRPKLKEMLERPVLKNLTGDDKIDLTSLTKIALQNTARPMMDATSWKEKSQYFASPRQQGAGLINVANALRNEVVATFKNTDSKGLVNSYGSISLKEIKGDKKYFTIKLHNTSNRPLTFKVSASAITTDSLTDRLKLDETYKDEKSPDGKQIVPEIHPEKVKGANITFEHDTFTIGANSSFDLNAVINVGEAKNKNKFVESFIHFESVEEMEALNSNGKKINFQPSLSMPLMGFAGNWNHEPILDKWAWEEGSRSKTLGGYDDDGKPKIPGTLNKGIGGEHGIDKFNPAGVIQNRKDKNTTSLDQNPELFAFNNEGINAPSSSGSKIANIYPLDSNGNPQDAQLERGLTPSPLVLRSAEEGLISIVNTNKEGENQRDLKVISREHFIRGILNSKSNDAKGIKSSKLKVWGDLKWDGLIYNPRGREENAPESKDNQDPATKIRGQFEPIAEGQYFYKFKYRLTKDYPWQVSYIPVKIDNTAPKIVSVDFSNPEKIKLITKDTYHKVKDQYKNETLFARDQKEHPEKFDEIANEVWYAGAALVNEDGEVEKNLEVTYAGEGQGRNRKLDKDGNTIYEIKGAGDLRGKIIEVIALDGSSNFTKIHRIKFANQADEKGMISYYLVDPDQDSSKYQKLGEIAESKFKNLGNGKEGSLKKDTTGVEHHHQENEESIKEKSSFTIDRNISTIRDFENKDLKKLIKKKYKEEDDFVTGGKRTVELDYKYDDKGNITAYEDESALEYETEKFDEIKSKIYGVLSPSKDGHFEILGKISNVSKNAKVYYGNNYKFIEIKATKYDSHSKTMIFDLYANINDIVDGLAFAGDMRLFVKDDNQIKAETKIRMPEKNKETKAEYPYVSSYGNVIELGEGDLSKNKPDNLTKMESGKIYSDSEKQQYLLKDNIILRKGYALKVTTYNPGKTDMLEGNGVYSKEDIAKIQKANPNLRVLSETTIYADSRNVEDGRSTQAVLMSALDGFNIIRYQVFTFKMNDKGEAIDKDGNLVTDSSKLVLFGKDDKEYTGEDKSNVEAIKEDGSMLFIDTKPVNLSMDKNYFNPSKFNKIYVRNPEFYLRGKISDKGGFNWELRVNESVVDNYLIYGDLHIDNTRDFNIKLNVKDGDIMDWGMKDYKANGFPDKVTDMDGNVYLQTGYSDLNAKAVGVHYQFLYDNVKPEVNIDPKGNTSIEYADGKSVVFNINDKRNNGFDGEIQEQHIYINGKEYTSFDDIKQIIDKTLNIKIVVKDFARNTTVKEFILNKDTGEVSELKPHRVTVTIQNGKEMSSTIVSEEDFILPVYKGELEKGYQFDGWEISGFEGKKDAGYVINLSKDTFIKPVFKKIEEKKEEENKPTFDVSKKKDNPQVNHSQLNESHRKEDLQREEHSQKSDSTKDVTATVLDKNNISSKSTTNNPNKLPKTGTASGAQTLLAAGIMFIVGIFLGLKKKNQD
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0558 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
⊟Relevant publications[edit | edit source]
G Bethe, R Nau, A Wellmer, R Hakenbeck, R R Reinert, H P Heinz, G Zysk
The cell wall-associated serine protease PrtA: a highly conserved virulence factor of Streptococcus pneumoniae.
FEMS Microbiol Lett: 2001, 205(1);99-104
[PubMed:11728722] [WorldCat.org] [DOI] (P p)Shaper Mirza, Landon Wilson, William H Benjamin, Jan Novak, Stephen Barnes, Susan K Hollingshead, David E Briles
Serine protease PrtA from Streptococcus pneumoniae plays a role in the killing of S. pneumoniae by apolactoferrin.
Infect Immun: 2011, 79(6);2440-50
[PubMed:21422179] [WorldCat.org] [DOI] (I p)Sacha F de Stoppelaar, Hester J Bootsma, Aldert Zomer, Joris J T H Roelofs, Peter W M Hermans, Cornelis van 't Veer, Tom van der Poll
Streptococcus pneumoniae serine protease HtrA, but not SFP or PrtA, is a major virulence factor in pneumonia.
PLoS One: 2013, 8(11);e80062
[PubMed:24244609] [WorldCat.org] [DOI] (I e)