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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 14-DEC-2020

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae NCTC7466
  • locus tag: DQM66_RS03120 [old locus tag: NCTC7466_00597 ]
  • pan locus tag?: PNEUPAN001606000
  • symbol: zmpB
  • pan gene symbol?: zmpB
  • synonym:
  • product: zinc metalloprotease ZmpB

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: DQM66_RS03120 [old locus tag: NCTC7466_00597 ]
  • symbol: zmpB
  • product: zinc metalloprotease ZmpB
  • replicon: chromosome
  • strand: +
  • coordinates: 599435..605065
  • length: 5631
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NZ_LS483374 (599435..605065) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_0577 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
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    1021
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    1381
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    1501
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    1681
    1741
    1801
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    1981
    2041
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    5041
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    5221
    5281
    5341
    5401
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    5521
    5581
    GTGTTTAAAAAAGACCGTTTTTCAATTCGTAAGATTAAGGGAGTTGTAGGCTCTGTATTT
    CTTGGAAGCCTTTTGATGGCTCCTTCTGTAGTGGACGCAGCCACCTATCACTATGTAAAT
    AAAGAGATTATTTCACAAGAAGCTAAAGATTTAATTCAGACAGGAAAGCCTGACAGGAAT
    GAAGTTGTATATGGTTTGGTGTATCAAAAAGATCAGTTGCCTCAAACAGGGACAGAAGCA
    TCTGTTTTGACAGCTTTTGGTTTGCTGACTGTTGGGAGCTTGCTTTTAATCTACAAGAGA
    AAGAAAATTGCTAGCGTCTTTCTAGTTGGAACTATGGGATTGGTAGTTCTTCCTAGTGCA
    GGGGCTGTAGACCCAGTTGCGACCCTAGCACTGGCTAGTCGAGAGGGTGTTGTTGAAATG
    GAGGGCTATCGCTATGTTGGTTATCTATCAGGTGACATCCTCAAAACGCTTGGCTTGGAC
    ACTGTTTTAGAAGAAACCTCAGCAAAACCTGGAGAGGTGACTGTAGTCGAAGTTGAGACT
    CCTCAATCAACAACAAATCAGGAGCAAGCTAGGACAGAAAACCAAGTAGTAGAGACAGAG
    GAAGCTCCAAAAGAAGAAGCACCTAAAACAGAAGAAAGTCCAAAGGAAGAACCAAAATCG
    GAGGTAAAACCTACTGACGACACCCTTCCTAAAGTAGAAGAGGGGAAAGAAGATTCAGCA
    GAACCAGCTCCAGTTGAAGAAGTAGGTGGAGAAGTTGAGTCAAAACCAGAGGAAAAAGTA
    GCAGTTAAGCCAGAAAGTCAACCATCAGACAAACCAGCTGAGGAATCAAAAGTTGAACAA
    GCAGGTGAACCAGTCGCGCCAAGAAAAGACGAACAGGCACCAGTCGAGCCAGAAAATCAA
    CCAGAAGCTCCTGAAGAAGAGAAGGCTGTAGAGGAAACACCGAAACAAGAAGAGTCAACT
    CCAGATACCAAGGCTGAAGAAACTGTAGAACCAAAAGAGGAGACTAAAACAGCTAAGGGG
    ACGCAAGAAGAAGGCAAAGAAGGTCAAGCACCAGTACAAGAAGTAAACCCAGAATATAAA
    GTAACAACAGGTACAGTTGAGAAGTCTACCGAAAGTGAATTAGATTTCACAACAGAAGTA
    GTTCCGGATGACACAAAATATGTAGATGAAGAAGTTGTTGAACGTCAAGGATCTAAAGGA
    GTTCAAGTTACGAAAACAACTTACGAAACAGTGGAAGTTGTAGAGACAGACAAAGTCCTT
    TCTACAACTACAGAAGTGAAAACTCCTGTTGTTCCTAAAGTCGTTAAAAAAGGAACAAAA
    CCAGTTGAAACAAGAGAAGAAGTCATTCCTTTTGCTACAAAAGAACAAGAAGATGACACT
    TTAAAACGCGGAACAAGACAAGTAGCTCAAGAAGGTGTAAACGGTAAGAAACAAATTACT
    GAAACCTATAAAACAATTCGCGGAGAAAAAACAAACGAAGCTCCAACAGTAGAAGAAACA
    GTTCTCCAAGCACCTCAAGATGAGATTATCAAAAAAGGTACAAAAGGGTTAGAAAAACCA
    ACACTACAATGGGCTAATACTGAAAAAGATGTCTTGAAGAAGAGTGCTACAGCTAGTTAT
    ACATTGACTAAACCAGCTGGTGTAGAAATTAAATCAATTAAATTAGCGCTAAAAGATAAA
    GATGGACAACTTGTTAAAGAAGTAACGGTAGCTGAAAATAATTTAAATGCTACTTTAGAT
    AAATTGAAATATTATCAAGGTTACACCCTATCTACTACAATGGTTTATGATCGTGGAGAA
    GGTGAAGAAACTGAGAAATTAGAAGATAAACAAATTCAATTAGACCTTAAAAAAGTTGAA
    ATCAAAAACATTAAAGAAACAAGCTTAATGAATGTTGATGCTGAGGGTAACGAAACTGAT
    AAGAGCTTATTATCTGAAAAACCGACAGATGTTTCCCAATTGTATTTACGTGTGACAACT
    CATGACAACAAAGTGACAAGACTTGCGGTAAGTTCAGTTGAAGAAGTTGTTGTTGATGGA
    AAAACATTGTACAAAGTTGTAGCCAAAGCTCCAGACTTAGTTCAACGTAGAGCTGATGAT
    ACACTGAGTGAAGAATATGTTCATTATTTTGAAAAACAATTACCAAAAGTAAATAATGTA
    TACTACAACTTCAATGAACTTGTAAAAGATATGCAAGCTAATCCAATGGGTGAGTTTAAA
    CTTGGTGCAGATTTGAATGCAGTTAACGTTAAGCCAGCAGGTAAAGCTTATGTTATGGCT
    AAATTTAGAGGTACTTTATCAAGTGTAGAGAATCATCAGTACACGATTCATAACTTAGAA
    AGACCTTTGTTTAATGAGGCTGAAGGTGCTACACTCAAAAACTTTAACTTAGGTAATGTA
    AATATAAACATGCCTTGGGCTGATAAAGTTGCACCTATTGGTAATATGTTTAAGAAGTCT
    ACACTTGAGAATATCAAAGTAGTGGGTTCAGTAACAGGAAATAACGATGTAACCGGTGCT
    GTTAATAAGTTAGACGAAGCTAATATGCGCAATGTAGCTTTTATTGGCAAGATTAACAGT
    CTTGGAGATAAAGGCTGGTGGTCTGGTGGACTTGTCAGCGAAAGTTGGCGAAGTAACACG
    GATAGTGTTTATTTTGACGGTGATATTGTAGGTAACAATTCTAAGTTTGGTGGTTTAGTA
    GCTAAAGTCAATCACGGAAGTAATCAGTGGGATGTTAAACAAAAAGGTCGTTTGACAAAT
    TCTGTTGTTAAAGGTACTATGACTCTGAAAAATCATGGTCAAAGTGGTGGTTTAGTTCAC
    GAAAACTATGACTGGGGTTGGGTTGAGAATAATATTAGTATGATGAAAGTCAATAACGGT
    GAAATTATGTATGGTTCAGGTTCTATTGACGGTGACCCATACTTTGGTTTTGACTACTTC
    AAAAATAATTATTATGTAAAAGATGTTGCTACTGGAGAAAGTACCTACAAGCGTTCGAAA
    CAGATTCAGTCTATCTCTCAAGCCGAAGCAGACGCCAAAATCGCTAATATGGGGATTACT
    GCGAATACCTTCGCTATTCAAGATCCAGTTGTAAACAAGTTAAATCGTATCATTGATAGA
    GATTCTGAATATAAAGCGATTCAGGACTACCAAGAAACAAGAAACCTAGCTTATCGAAAC
    TTGGAAAAACTTCAACCGTTCTATAATAAAGAGTGGATTGTAAACCAAGGGAATAAGTTA
    ACAGATGAGTCCAATCTTGTTAAGAAAACCGTTCTGTCTGTAACGGGTATGAAATCAGGG
    CAATTTGTTACTGATTTATCAAGTGTGGATAAAATCATGATTCACTATGCCGATGGAACC
    AAAGAAGAATTTGGGGTATCTGCGATTTCGGACTCTAGGGTAAAACAAGTCAAAGAATAT
    AATGTAGATGATTTAGGTGTAGTTTACACTCCTAATATGGTTGATAAGAACAGAGATTCT
    TTGATTACGAAAGTTAAAGAGAAGTTGAGTTCTGTTGCTTTAGACTCTGCTGAGGTTAAA
    TCTATTACAAATAACCCTGCATCTCTATACCTAGAAGAAAGTTTCGCTGAGGTTAGAGAG
    ACGTTAGATAAGTTAGTGAAGTCCTTGTTAGAAAATGAAGATCATCAACTGAACAGTGAT
    GAAGTGGCTGAGAAGGCGCTTCTCAAGAAAGTTGAAGATAATAAAGCTAAGATTATATTA
    GCCTTGACTTATCTAAATCGTTATTATGGTATCGACTATGATGGCTTGAACTTTAAGCAT
    TTGATGATGTTTAAACCAGACTTTTATGGTAAAACACCAAGTATTTTAGATTTCTTGATT
    CGTATAGGTTCAGCAGAAAAGAATTTAAAAGGAGATAGAAGTTTAGAAGCTTATCGTGAA
    GTTATTGGTGGTACTATTGGAAAAGGGGAATTAAATGGCTTGTTAGGTTATAACATGCGT
    TTATTCACTAAGTACACTGACTTAAATGATTGGTTTATTCATGCTGCAAAGAACGTTTAT
    GTTTCTGAGCCTGAGACGACTACAGAGGATTTCAAAGACAAGCGCCATCGTATCTATGAC
    GGTTTGAATAATGATGTTCACGGTCGTATGATTTTACCGTTATTGAATTTGAAAAAAGCG
    CATATTTTTGTGATTTCGACTTACAATACAATAGCCTTTAGTTCCTTTGAAAAATATGGT
    AAGAATACAGAAGAAGAGCGGAACGCTTATAAAGCTGAGATTGATAGGGTTGCAAAAGCA
    CAACAACGTTACTTAGACTTCTGGTCTCGTTTAGCTTTACCGAAAGTTCGCAATCAACTT
    TTGAAGAGTCAAAACTCTGTACCAACTCCTGTTTGGGATAATCAAGTTTATGTAGGTTTA
    GGTGGTGCAAACCGTATGGGTTACGGTGATGGGGGTCGAGTAGTAACTCCAGTTCGTGAA
    TTATTCGGCCCGACTGATCGTTGGCACCAAATAAACTGGAATATGGGAGCGATGGCGAAG
    ATTTATGAACGTCCTTGGAAAGATGATCAAGTTTATTTCATGGTTACAAATATGATGGAG
    CCGTTCGGTATCTCAGCCTTTACCCATGAAACTACTCACGTCAATGATAGAATGGCTTAC
    TACGGTGGAGATTGGCACCGTGAAGGTACGGATTTAGAAGCCTTTGCTCAAGGCATGTTG
    CAAACACCTGATAAGTCAACAACCAATGGTGAATACGGTGCTCTCGGTATCAATATGGCT
    TATGAGCGTAAAAATGATGGTGAACAGCTTTACAATTATGACCCTGAGAAGTTAGATAGT
    AGAGAGAAAATTGATAGTTACATGAAGAACTACAATGAGTCTATGATGATGCTTGACTAC
    TTAGAAGCTAGTGCAGTTATTCGTCAAAATTTGTCTGATAATTCTAAGTGGTTCAAGAAG
    ATGGATAAAGAGTGGCGCACTAATGCAGATAGAAACCGTTTAATTGGAGAACCGCATCAG
    TGGGATAAATTACGTGATTTAACAGAAGAAGAGAAGAAGTTACCTATTGACAGTATTGAC
    AAGTTGGTAGAGAATAACTTTGTAACTCTTCATGGTATGCCGAAGAACGGTCGTTACCGC
    ACAGAAGGTTTTGATAGCTCTTATCAACCTGTAAACATGATGGCAGGTGTCTTTGGAGGG
    AATACAAGTAAAAGCACCGTAGGGTCTATTTCATTTAAACATAATGCTTTCCGTATGTGG
    GGATACTATGGATATGAAAATGGCTTTATTCCTTATGTTTCTAACAAGTTAAAAGGTGCT
    GCAAATAAAGAGAATAAAGGGCTTTTAGGTGATGATTTCATTATCAAGAAAGTTTCTAAG
    AATCAATTCCAAAATCTCGAAGAGTGGAAGAAGCATTGGTATCATGAAGTTTATGATAAA
    GCACAAAAAGGCTTTGTTGAGATTGAGGTAGACGGAGTGAAAATTTCAACGTATGCTCAG
    TTACAATCCTTATTTGAAGAAGCTGTTAGCAAAGATCTTGCAGGTATGGATGATAAGAAC
    ATTAAGAATCATTACCAATATACAGAGAATCTCAAGTGGAAAATATACAAACAACTCCTT
    AAAAACACAGACGGTTTCTCTAGTGATCTATTTACTGCACCACAAGCATAG
    60
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    5460
    5520
    5580
    5631

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: DQM66_RS03120 [old locus tag: NCTC7466_00597 ]
  • symbol: ZmpB
  • description: zinc metalloprotease ZmpB
  • length: 1876
  • theoretical pI: 5.06339
  • theoretical MW: 211057
  • GRAVY: -0.657516

⊟Function[edit | edit source]

  • TIGRFAM:
    Cell structure Cell envelope Other LPXTG cell wall anchor domain (TIGR01167; HMM-score: 26.2)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    no clan defined Peptidase_M26_C; M26 IgA1-specific Metallo-endopeptidase C-terminal region (PF07580; HMM-score: 1089.5)
    and 7 more
    Peptidase_M26_N; M26 IgA1-specific Metallo-endopeptidase N-terminal region (PF05342; HMM-score: 297.2)
    G5 (CL0593) G5; G5 domain (PF07501; HMM-score: 75.2)
    no clan defined Gram_pos_anchor; LPXTG cell wall anchor motif (PF00746; HMM-score: 29.8)
    E-set (CL0159) fn3; Fibronectin type III domain (PF00041; HMM-score: 15.4)
    no clan defined Imm57; Immunity protein 57 (PF15596; HMM-score: 12.9)
    Sas10_Utp3; Sas10/Utp3/C1D family (PF04000; HMM-score: 12.2)
    YSIRK_signal; YSIRK type signal peptide (PF04650; HMM-score: 10.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cellwall
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 10
    • Extracellular Score: 0
    • Internal Helices: 2
  • SignalP: Signal peptide SP(Sec/SPI) length 33 aa
    • SP(Sec/SPI): 0.98483
    • TAT(Tat/SPI): 0.008282
    • LIPO(Sec/SPII): 0.001095
    • Cleavage Site: CS pos: 33-34. VDA-AT. Pr: 0.9782
  • predicted transmembrane helices (TMHMM): 3

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000473008 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MFKKDRFSIRKIKGVVGSVFLGSLLMAPSVVDAATYHYVNKEIISQEAKDLIQTGKPDRNEVVYGLVYQKDQLPQTGTEASVLTAFGLLTVGSLLLIYKRKKIASVFLVGTMGLVVLPSAGAVDPVATLALASREGVVEMEGYRYVGYLSGDILKTLGLDTVLEETSAKPGEVTVVEVETPQSTTNQEQARTENQVVETEEAPKEEAPKTEESPKEEPKSEVKPTDDTLPKVEEGKEDSAEPAPVEEVGGEVESKPEEKVAVKPESQPSDKPAEESKVEQAGEPVAPRKDEQAPVEPENQPEAPEEEKAVEETPKQEESTPDTKAEETVEPKEETKTAKGTQEEGKEGQAPVQEVNPEYKVTTGTVEKSTESELDFTTEVVPDDTKYVDEEVVERQGSKGVQVTKTTYETVEVVETDKVLSTTTEVKTPVVPKVVKKGTKPVETREEVIPFATKEQEDDTLKRGTRQVAQEGVNGKKQITETYKTIRGEKTNEAPTVEETVLQAPQDEIIKKGTKGLEKPTLQWANTEKDVLKKSATASYTLTKPAGVEIKSIKLALKDKDGQLVKEVTVAENNLNATLDKLKYYQGYTLSTTMVYDRGEGEETEKLEDKQIQLDLKKVEIKNIKETSLMNVDAEGNETDKSLLSEKPTDVSQLYLRVTTHDNKVTRLAVSSVEEVVVDGKTLYKVVAKAPDLVQRRADDTLSEEYVHYFEKQLPKVNNVYYNFNELVKDMQANPMGEFKLGADLNAVNVKPAGKAYVMAKFRGTLSSVENHQYTIHNLERPLFNEAEGATLKNFNLGNVNINMPWADKVAPIGNMFKKSTLENIKVVGSVTGNNDVTGAVNKLDEANMRNVAFIGKINSLGDKGWWSGGLVSESWRSNTDSVYFDGDIVGNNSKFGGLVAKVNHGSNQWDVKQKGRLTNSVVKGTMTLKNHGQSGGLVHENYDWGWVENNISMMKVNNGEIMYGSGSIDGDPYFGFDYFKNNYYVKDVATGESTYKRSKQIQSISQAEADAKIANMGITANTFAIQDPVVNKLNRIIDRDSEYKAIQDYQETRNLAYRNLEKLQPFYNKEWIVNQGNKLTDESNLVKKTVLSVTGMKSGQFVTDLSSVDKIMIHYADGTKEEFGVSAISDSRVKQVKEYNVDDLGVVYTPNMVDKNRDSLITKVKEKLSSVALDSAEVKSITNNPASLYLEESFAEVRETLDKLVKSLLENEDHQLNSDEVAEKALLKKVEDNKAKIILALTYLNRYYGIDYDGLNFKHLMMFKPDFYGKTPSILDFLIRIGSAEKNLKGDRSLEAYREVIGGTIGKGELNGLLGYNMRLFTKYTDLNDWFIHAAKNVYVSEPETTTEDFKDKRHRIYDGLNNDVHGRMILPLLNLKKAHIFVISTYNTIAFSSFEKYGKNTEEERNAYKAEIDRVAKAQQRYLDFWSRLALPKVRNQLLKSQNSVPTPVWDNQVYVGLGGANRMGYGDGGRVVTPVRELFGPTDRWHQINWNMGAMAKIYERPWKDDQVYFMVTNMMEPFGISAFTHETTHVNDRMAYYGGDWHREGTDLEAFAQGMLQTPDKSTTNGEYGALGINMAYERKNDGEQLYNYDPEKLDSREKIDSYMKNYNESMMMLDYLEASAVIRQNLSDNSKWFKKMDKEWRTNADRNRLIGEPHQWDKLRDLTEEEKKLPIDSIDKLVENNFVTLHGMPKNGRYRTEGFDSSYQPVNMMAGVFGGNTSKSTVGSISFKHNAFRMWGYYGYENGFIPYVSNKLKGAANKENKGLLGDDFIIKKVSKNQFQNLEEWKKHWYHEVYDKAQKGFVEIEVDGVKISTYAQLQSLFEEAVSKDLAGMDDKNIKNHYQYTENLKWKIYKQLLKNTDGFSSDLFTAPQA

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Damiana Chiavolini, Guido Memmi, Tiziana Maggi, Francesco Iannelli, Gianni Pozzi, Marco R Oggioni
The three extra-cellular zinc metalloproteinases of Streptococcus pneumoniae have a different impact on virulence in mice.
BMC Microbiol: 2003, 3;14
[PubMed:12841855] [WorldCat.org] [DOI] (I e)C E Blue, G K Paterson, A R Kerr, M Bergé, J P Claverys, T J Mitchell
ZmpB, a novel virulence factor of Streptococcus pneumoniae that induces tumor necrosis factor alpha production in the respiratory tract.
Infect Immun: 2003, 71(9);4925-35
[PubMed:12933834] [WorldCat.org] [DOI] (P p)

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